个人简历

焦远年

  • 职称:研究员
  • 出生地:江苏省泰州市
  • 出生年月:1982年1月
  • 部门:系统与进化植物学国家重点实验室
  • 课题组:生物信息学和植物基因组进化研究组
  • 职务:
  • 地 址: 北京市海淀区香山南辛村20号
  • 邮政编码: 100093
  • 电 话: (86)-010-62836077
  • 传 真: (86)-010-62836095
  • 电子邮件: jiaoyn@ibcas.ac.cn
个人简历

    焦远年,中国科学院植物研究所研究员、博士生导师。2004年毕业于中国农业大学生物学院,获学士学位,2011年在美国宾夕法尼亚州立大学获得博士学位,2011年至2014年分别在宾夕法尼亚州立大学和佐治亚州立大学做博士后研究。2015年到中国科学院植物研究所系统与进化植物学国家重点实验室工作,成立了生物信息学和植物基因组进化研究组。  

      主要研究方向  

    1)生物信息学:

    大数据时代的到来预示着生物领域的飞速发展,而生物信息学的研究也越来越重要。我们可以利用基因组、转录组、表观基因组和表型组等数据来挖掘基因、基因家族和基因组的变化对植物适应性的重要贡献。

    2)植物基因组进化:

    地球上现有的被子植物超过30万种,属于陆地植物最繁荣以及形态最多样化的一个分支。早在1879年,达尔文就将被子植物的“突然出现”并快速分化称作“讨厌之谜”(abominable mystery),而这个“讨厌之谜”一直都是古植物学中的重大科学问题。利用大规模DNA测序和其他组学数据,我们可以更好地研究植物进化过程基因组水平的变化,进一步探索物种形成和迅速分化的机制。

    3)多倍化及其重要意义:

  多倍化事件在真核生物进化过程中起到了极其重要的作用,揭示植物进化过程中曾发生的多倍化事件,对研究基因组加倍在物种形成及创新性功能产生上的贡献是十分必要的,并且对于鉴别类群间真正的直系同源基因也具有极其重要的指导意义。

      人员招聘  

    本研究组将招收博士研究生, 具体考试报名时间和考试内容,请参照当年的中科院植物所的招生简章和招生目录。同时,我们急需招聘博士后、客座研究人员、助理研究员 1-2名,专业领域为基因组学或生物信息学。具体事宜请与焦远年直接联系。

主要经历

    2000.9 - 2004.7  中国农业大学 生物学院    学士学位

    2006.8 - 2011.8   美国宾夕法尼亚州立大学  博士学位

    2011.8 - 2012.8   美国宾夕法尼亚州立大学  博士后

    2012.9 - 2014.6   佐治亚大学              博士后

学术兼职

    现任Front Plant Sci 副主编,J Syst Evol 编委。

科研项目

    主持中国科学院战略性先导科技专项(A类)子课题“特色观赏和药用植物的基因标识研究与关键物种的产地溯源”(XDA23080203,2019-01至2023-12,200万元);

    主持国家自然科学基金委员会面上项目“多倍化后小麦基因组和三维基因组结构变异及其进化意义的研究”(31870209,2019-01至2022-12,60万元)。

人才培养
主要成绩
论文专著

    2020

  Wu, Shengdan; Han, Baocai; Jiao, Yuannian*; Genetic contribution of paleopolyploidy to adaptive evolution in angiosperms, Molecular Plant, 2020, 13(1): 59-71.

  Zhang, Xiaoxia; Li, Xiaoxia; Zhao, Ran; Zhou, Yun; Jiao, Yuannian*; Evolutionary strategies drive a balance of the interacting gene products for the CBL and CIPK gene families, New Phytologist, 2020, 226(5): 1506-1516.

  Liu, Pingli#; Zhang, Xi#; Mao, Jianfeng#; Hong, Yanming#; Zhang, Rengang; Yilan, E.; Nie, Shuai; Jia, Kaihua; Jiang, Chenkun; He, Jian; Shen,Weiwei; He, Qizouhong; Zheng, Wenqing; Abbas, Samar; Jewaria, Pawan Kumar;

  Tian, Xuechan; Liu, Changjun; Jiang, Xiaomei; Yin, Yafang; Liu, Bo; Wang, Li; Jin, Biao; Ma, Yongpeng; Qiu, Zongbo; Baluska, Frantisek; Samaj, Jozef; He, Xinqiang; Niu, Shihui; Xie, Jianbo; Xie, Lei; Xu, Huimin; Kong, Hongzhi; Ge, Song; Dixon, Richard A.; Jiao, Yuannian*; Lin, Jinxing*; The Tetracentron genome provides insight into the early evolution of eudicots and the formation of vessel elements, Genome Biology, 2020, 21(1): 291.

  Xie, Jinghe#; Zhao, Haifeng#; Li, Kunpeng#; Zhang, Rui; Jiang, Yongchao; Wang, Meimei; Guo, Xuelian; Yu, Ben; Kong, Hongzhi*; Jiao, Yuannian*; Xu, Guixia*; A chromosome-scale reference genome of Aquilegia oxysepala var. kansuensis, Horticulture Research, 2020, 7(1): 113.

  Ali, Roshan*; Jiao, Yuannian; Wall, Kerr P; Patching, Simon G*; Ahmad, Irshad; Lutfulla, Ghosia; dePamphilis, Claude W; In silico identification and structure function analysis of a putative coclaurine N-methyltransferase from Aristolochia fimbriata , Computational Biology and Chemistry, 2020, 85: 107201-107201.

  Zhang, Liangsheng#*; Chen, Fei#; Zhang, Xingtan#; Li, Zhen#; Zhao, Yiyong#; Lohaus, Rolf#; Chang, Xiaojun#; Dong, Wei; Ho, Simon Y. W.; Liu, Xing; Song, Aixia; Chen, Junhao; Guo, Wenlei; Wang, Zhengjia; Zhuang, Yingyu; Wang, Haifeng; Chen, Xuequn; Hu, Juan; Liu, Yanhui; Qin, Yuan; Wang, Kai; Dong, Shanshan; Liu, Yang; Zhang, Shouzhou; Yu, Xianxian; Wu, Qian; Wang, Liangsheng; Yan, Xueqing; Jiao, Yuannian; Kong, Hongzhi; Zhou, Xiaofan; Yu, Cuiwei; Chen, Yuchu; Li, Fan; Wang, Jihua; Chen, Wei; Chen, Xinlu; Jia, Qidong; Zhang, Chi; Jiang, Yifan; Zhang, Wanbo; Liu, Guanhua; Fu, Jianyu; Chen, Feng; Ma, Hong; Van de Peer, Yves; Tang, Haibao; The water lily genome and the early evolution of flowering plants , Nature, 2020, 577(7788): 79-84.

  Chen, Yongming; Song, Wanjun; Xie, Xiaoming; Wang, Zihao; Guan, Panfeng; Peng, Huiru; Jiao, Yuannian; Ni, Zhongfu; Sun, Qixin; Guo, Weilong*; A collinearity-incorporating homology inference strategy for connecting emerging assemblies in the Triticeae tribe as a pilot practice in the plant pangenomicera, Molecular Plant, 2020, 13(12): 1694-1708.

  Liu, Jin#; Shi, Cong#; Shi, Chengcheng#; Li, Wei#; Zhang, Qunjie#; Zhang, Yun; Li, Kui; Lu, Huifang; Shi, Chao; Zhu, Sitao; Xiao, Zaiyun; Nan, Hong; Yue, Yao; Zhu, Xunge; Wu, Yu; Hong, Xiaoning; Fan, Guangyi; Tong, Yan; Zhang, Dan; Mao, Changli; Liu, Yunlong; Hao, Shilie; Liu, Weiqing; Lv, Meiqi; Zhang, Haibin; Liu, Yuan; Hu-tang, Geran; Wang, Jinpeng; Wang, Jiahao; Sun, Yinghuai; Ni, Shubang; Chen, Wenbin; Zhang, Xingcai; Jiao, Yuannian; Eichler, Evan E.; Li, Guohua; Liu, Xin*; Gao, Lizhi*; The chromosome-based rubber tree genome provides new insights into spurge genome evolution and rubber biosynthesis , Molecular Plant, 2020, 13(2): 336-350.

  Zhang, Jian#; Fu, Xinxing#; Li, Ruiqi#; Zhao, Xiang#; Liu, Yang#; Li, Minghe#; Zwaenepoel, Arthur#; Ma, Hong; Goffinet, Bernard; Guan, Yanlong; Xue, Jiayu; Liao, Yiying; Wang, Qingfeng; Wang, Qinghua; Wang, Jieyu; Zhang, Guo Qiang; Wang, Zhiwen; Jia, Yu; Wang, Meizhi; Dong, Shanshan; Yang, Jianfen; Jiao , Yuannian; Guo, Yalong; Kong, Hongzhi; Lu, Anming; Yang, Huanming; Zhang, Shouzhou*; Van de Peer, Yves*; Liu, Zhongjian*; Chen, Zhiduan*; The hornwort genome and early land plant evolution , Nature Plants, 2020, 6(2): 107-118

  Zhang, Liangsheng#*; Wu, Shengdan#; Chang, Xiaojun; Wang, Xiuyun; Zhao, Yunpeng; Xia, Yiping; Trigiano, Robert N.; Jiao, Yuannian*; Chen, Fei*; The ancient wave of polyploidization events in flowering plants and their facilitated adaptation to environmental stress, Plant, Cell and Environment, 2020, 43(12): 2847-2856.

    Guo, Hui#; Jiao, Yuannian#; Tan, Xu; Wang, Xiyin; Huang, Xianzhong; Jin, Huizhe; Paterson, Andrew H*; Gene duplication and genetic innovation in cereal genomes, Genome Research, 2019, 29(2): 261-269.

  2019

  Yoshida, Satoko; Kim, Seungill; Wafula, Eric K.; Tanskanen, Jaakko; Kim, Yong-Min; Honaas, Loren; Yang, Zhenzhen; Spallek, Thomas; Conn, Caitlin E.; Ichihashi, Yasunori; Cheong, Kyeongchae; Cui, Songkui; Der, Joshua P.; Gundlach, Heidrun; Jiao, Yuannian; Hori, Chiaki; Ishida, Juliane K.; Kasahara, Hiroyuki; Kiba, Takatoshi; Kim, Myung-Shin; Koo, Namjin; Laohavisit, Anuphon; Lee, Yong-Hwan; Lumba, Shelley; McCourt, Peter; Mortimer, Jenny C.; Mutuku, J. Musembi; Nomura, Takahito; Sasaki-Sekimoto, Yuko; Seto, Yoshiya; Wang, Yu; Wakatake, Takanori; Sakakibara, Hitoshi; Demura, Taku; Yamaguchi, Shinjiro; Yoneyama, Koichi; Manabe, Ri-ichiroh; Nelson, David C.; Schulman, Alan H.; Timko, Michael P.; DePamphilis, Claude W.; Choi, Doil; Shirasu, Ken*; Genome sequence of Striga asiatica provides insight into the evolution of plant parasitism , Current Biology, 2019, 29(18): 3041-3052

  Guo, Hui#; Jiao, Yuannian#; Tan, Xu; Wang, Xiyin; Huang, Xianzhong; Jin, Huizhe; Paterson, Andrew H*; Gene duplication and genetic innovation in cereal genomes, Genome Research, 2019, 29(2): 261-269

  2018

  Rusch, Michael#; Nakitandwe, Joy#; Shurtleff, Sheila#; Newman, Scott#; Zhang, Zhaojie; Edmonson, Michael N; Parker, Matthew; Jiao, Yuannian; Ma, Xiaotu; Liu, Yanling; Gu, Jiali; Walsh, Michael F; Becksfort, Jared; Thrasher, Andrew; Li, Yongjin; McMurry, James; Hedlund, Erin; Patel, Aman; Easton, John; Yergeau, Donald; Vadodaria, Bhavin; Tatevossian, Ruth G; Raimondi, Susana; Hedges, Dale; Chen, Xiang; Hagiwara, Kohei; McGee, Rose; Robinson, Giles W; Klco, Jeffery M; Gruber, Tanja A; Ellison, David W*; Downing, James R*; Zhang, Jinghui*; Clinical cancer genomic profiling by three-platform sequencing of whole genome, whole exome and transcriptome, Nature Communications, 2018, 9: 3962.

  Jiao, Yuannian*; Double the genome, double the fun: genome duplications in angiosperms, Molecular Plant, 2018, 11(3): 357-358.

  Hu, Yiheng#; Zhao, Ran#; Xu, Peng; Jiao, Yuannian*; The genome of opium poppy reveals evolutionary history of morphinan pathway, Genomics Proteomics Bioinformatics, 2018, 16(6): 460-462.

  2017

  Zhao, Guangyao#; Zou, Cheng#; Li, Kui#; Wang, Kai; Li, Tianbao; Gao,Lifeng; Zhang, Xiaoxia; Wang, Hongjin; Yang, Zujun; Liu, Xu; Jiang, Wenkai*;Mao, Long*; Kong, Xiuying*; Jiao, Yuannian*; Jia, Jizeng*; The Aegilops tauschii genome reveals multiple impacts of transposons , Nature Plants, 2017, 3(12):946-955.

  Xia, Chuan#; Zhang, Lichao#; Zou, Cheng#; Gu, Yongqiang; Duan, Jialei; Zhao, Guangyao; Wu, Jiajie; Liu, Yue; Fang, Xiaohua; Gao, Lifeng; Jiao, Yuannian; Sun, Jiaqiang; Pan, Yinghong; Liu, Xu; Jia, Jizeng*; Kong, Xiuying*; A TRIM insertion in the promoter of Ms2 causes male sterility in wheat, Nature Communications, 2017, 8: 15407.

  Liu, Yue#; Zhang, Wenli#; Zhang, Kang; You, Qi; Yan, Hengyu; Jiao, Yuannian; Jiang, Jiming; Xu, Wenying; Su, Zhen*; Genome-wide mapping of DNase I hypersensitive sites reveals chromatin accessibility changes in Arabidopsis euchromatin and heterochromatin regions under extended darkness, Scientific Reports, 2017, 7(1): 4093.

  2016

  Lee, HueyTyng; Golicz, Agnieszka A.; Bayer, Philipp E.; Jiao, Yuannian ; Tang, Haibao; Paterson, Andrew H.; Sablok, Gaurav; Krishnaraj, Rahul R.; Chan, Chon-Kit Kenneth; Batley, Jacqueline; Kendrick, Gary A.; Larkum, Anthony W. D.; Ralph, Peter J.; Edwards, David*; The genome of a southern hemisphere seagrass species (Zostera muelleri), Plant Physiology, 2016, 172(1): 272-283.

  Sezen, Uzay U.; Barney, Jacob N.; Atwater, Daniel Z.; Pederson, Gary A.; Pederson, Jeffrey F.; Chandler, Mike J.; Cox, Stan T.; Cox, Sheila; Dotray, Peter; Kopec, David; Smith, Steven E.; Schroeder, Jill; Wright, Steven D.; Jiao, Yuannian; Kong, Wenqian; Goff, Valorie; Auckland, Susan; Rainville, Lisa K.; Pierce, Gary J.; Lemke, Cornelia; Compton, Rosana; Phillips, Christine; Kerr, Alexandra; Mettler, Matthew; Paterson, Andrew H.*; Multi-phase US spread and habitat switching of a post-Columbian invasive, Sorghum halepense, Plos One, 2016, 11(10): e0164584

  2015

  Pu, Juan#; Wang, Shuoguo#; Yin, Yanbo#; Zhang, Guozhong; Carter, Robert A; Wang, Jinliang; Xu, Guanlong; Sun, Honglei; Wang, Min; Wen, Chu; Wei, Yandi;Wang, Dongdong; Zhu, Baoli; Lemmon, Gordon; Jiao, Yuannian; Duan, Susu; Wang,Qian; Du, Qian; Sun, Meng; Bao, Jinnan; Sun, Yipeng; Zhao, Jixun; Zhang, Hui;Wu, Gang; Liu, Jinhua*; Webster, Robert G*; Evolution of the H9N2 influenza genotype that facilitated the genesis of the novel H7N9 virus, Proceedings of the National Academy of Sciences of the United States of America, 2015, 112(2):548-553.

  2014

  Jiao, Yuannian#; Li, Jingping#; Tang, Haibao#; Paterson, Andrew H.*; Integrated syntenic and phylogenomic analyses reveal an ancient genome duplication in monocots, Plant Cell, 2014, 26(7): 2792-2802.

  Jiao, Yuannian; Paterson, Andrew H.*; Polyploidy-associated genome modifications during land plant evolution, Philosophical Transactions of the Royal Society B: Biological Sciences, 2014, 369(1648): 20130355.

  Jiao, Yuannian*; Guo, Hui; Prehistory of the angiosperms:characterization of the ancient genomes, The Netherlands: Academic Press, 2014 Volume 69, ISSN 0065-2296(* corresponding author).

  2013

  Amborella Genome Project. 2013. The Amborella genome and the evolution of flowering plants. Science. 342 (6165) DOI: 10.1126/science.1241089 (Major contributor for Global Gene Family Analysis).

  Ming, Ray#*; VanBuren, Robert#; Liu, Yanling#; Yang, Mei#; Han, Yuepeng; Li, Lei-Ting; Zhang, Qiong; Kim, Min-Jeong; Schatz, Michael C.; Campbell, Michael; Li, Jingping; Bowers, John E.; Tang, Haibao; Lyons, Eric;Ferguson, Ann A.; Narzisi, Giuseppe; Nelson, David R.; Blaby-Haas, Crysten E.; Gschwend, Andrea R.; Jiao, Yuannian; Der, Joshua P.; Zeng, Fanchang; Han, Jennifer; Min, Xiang Jia; Hudson, Karen A.; Singh, Ratnesh; Grennan, Aleel K.; Karpowicz, Steven J.; Watling, Jennifer R.; Ito, Kikukatsu; Robinson, Sharon A.; Hudson, Matthew E.; Yu, Qingyi; Mockler, Todd C.; Carroll, Andrew; Zheng, Yun; Sunkar, Ramanjulu; Jia, Ruizong; Chen, Nancy; Arro, Jie; Wai, Ching Man; Wafula, Eric; Spence, Ashley; Han, Yanni; Xu, Liming; Zhang, Jisen; Peery, Rhiannon; Haus, Miranda J.; Xiong, Wenwei; Walsh, James A.; Wu, Jun; Wang, Ming-Li; Zhu, Yun J.; Paull, Robert E.; Britt, Anne B.; Du, Chunguang; Downie, Stephen R.; Schuler, Mary A.; Michael, Todd P.; Long, Steve P.; Ort, Donald R.; Schopf, William J.; Gang, David R.; Jiang, Ning; Yandell, Mark; dePamphilis, Claude W.; Merchant, Sabeeha S.; Paterson, Andrew H.; Buchanan, Bob B.; Li, Shaohua*; Shen-Miller, Jane*; Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.), Genome Biology, 2013, 14: R41.

  Bliss, Barbara J.#*; Wanke, Stefan#; Barakat, Abdelali; Ayyampalayam, Saravanaraj; Wickett, Norman J.; Wall, Kerr P.; Jiao, Yuannian; Landherr, Lena; Ralph, Paula E.; Hu, Yi; Neinhuis, Christoph; Leebens-Mack, Jim; Arumuganathan, Kathiravetpilla; Clifton, Sandra W.; Maximova, Siela N.; Ma, Hong; dePamphilis, Claude W.*; Characterization of the basal angiosperm Aristolochia fimbriata: a potential experimental system for genetic studies, BMC Plant Biology, 2013, 13: 13

  Zhang, Yeting; Fernandez-Aparicio, Monica; Wafula, Eric K.; Das, Malay; Jiao, Yuannian; Wickett, Norman J.; Honaas, Loren A.; Ralph, Paula E.; Wojciechowski, Martin F.; Timko, Michael P.; Yoder, John I.; Westwood, James H.; Depamphilis, Claude W.*; Evolution of a horizontally acquired legume gene, albumin 1, in the parasitic plant Phelipanche aegyptiaca and related species, BMC Evolutionary Biology, 2013, 13: 48.

  2012

  Jiao, Yuannian; Leebens-Mack, Jim; Ayyampalayam, Saravanaraj; Bowers, John E.; McKain, Michael R.; McNeal, Joel; Rolf, Megan; Ruzicka, Daniel R.; Wafula, Eric; Wickett, Norman J.; Wu, Xiaolei; Zhang, Yong; Wang, Jun; Zhang, Yeting; Carpenter, Eric J.; Deyholos, Michael K.; Kutchan, Toni M.; Chanderbali, Andre S.; Soltis, Pamela S.; Stevenson, Dennis W.; McCombie, Richard; Pires, Chris J.; Wong, Gane Ka-Shu; Soltis, Douglas E.; Depamphilis, Claude W.*; A genome triplication associated with early diversification of the core eudicots, Genome Biology, 2012, 13: R3

  Adams, Joshua Pope*; Adeli, Ardeshir; Hsu, Chuan-Yu; Harkess, Richard L.; Page, Grier P.; dePamphilis, Claude W.; Jiao, Yuannian; Schultz, Emily B.; Yuceer, Cetin; Characterization of poplar ZIP family members ZIP1.2 and ZNT1, Journal of Plant Genetics & Transgenetics, 2012, 3(1): 1-13.

  2011

  Jiao, Yuannian; Wickett, Norman J.; Ayyampalayam, Saravanaraj; Chanderbali, Andre S.; Landherr, Lena; Ralph, Paula E.; Tomsho, Lynn P.; Hu, Yi; Liang, Haiying; Soltis, Pamela S.; Soltis, Douglas E.; Clifton, Sandra W.; Schlarbaum, Scott E.; Schuster, Stephan C.; Ma, Hong; Leebens-Mack, Jim; dePamphilis, Claude W.*; Ancestral polyploidy in seed plants and angiosperms, Nature, 2011, 473(7345): 97-100.

  Zuccolo, Andrea; Bowers, John E.; Estill, James C.; Xiong, Zhiyong; Luo, Meizhong; Sebastian, Aswathy; Goicoechea, José Luis; Collura, Kristi; Yu, Yeisoo; Jiao, Yuannian; Duarte, Jill; Tang, Haibao; Ayyampalayam, Saravanaraj; Rounsley, Steve; Kudrna, Dave; Paterson, Andrew H.; Pires, Chris J.; Chanderbali, Andre; Soltis, Douglas E.; Chamala, Srikar; Barbazuk, Brad; Soltis, Pamela S.; Albert, Victor A.; Ma, Hong; Mandoli, Dina; Banks, Jody; Carlson, John E.; Tomkins, Jeffrey; dePamphilis, Claude W.; Wing, Rod A.; Leebens-Mack, Jim*; A physical map for the Amborella trichopoda genome sheds light on the evolution of angiosperm genome structure, Genome Biology, 2011, 12 : R48.

  Liang, Haiying*; Ayyampalayam, Saravanaraj; Wickett, Norman J.; Barakat, Abdelali; Xu, Yi; Landherr, Lena; Ralph, Paula E.; Jiao, Yuannian; Xu, Tao; Schlarbaum, Scott E.; Ma, Hong; Leebens-Mack, James H.; dePamphilis, Claude W.*; Generation of a large-scale genomic resource for functional and comparative genomics in Liriodendron tulipifera L., Tree Genetics & Genomes, 2011, 7(5): 941-954

  2010年及以前

  Huanjun Guo*, Yuannian Jiao*, Chao Di, Dongxia Yao, Gaihua Zhang, Xue Zheng, Lan Liu, Qunlian Zhang, Aiguang Guo, Zhen Su .2009. Discovery of Arabidopsis GRAS Family Genes Responded to Osmotic and Drought Stress. Chinese Bulletin of Botany. 44 (3): 290-299 (*contributed equally) .

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