1. 2020.12－2022.12 中国科学院国际伙伴计划项目：全球三大典型山地植物物种演化与共存机制比较研究，专题负责人。(Project title: Comparative study on species evolution and coexistence mechanism of three typical mountain plants in the world)
2. 2020.01－2024.12 中国科学院十四五信息化专项：科学大数据工程（二期）－DarwinTree：面向系统发育研究特色数据库，课题负责人。(Project title: The project of science big data)
3. 2019.01－2019.12 环保部中国环科院项目：重点野生维管植物遗传多样性大数据本底调查与评估，专题负责人。(Project title: Investigation and evaluation of genetic diversity of key wild vascular plants)
4. 2018.07－2023.06中国科学院战略性先导科技专项(B类XDB31000000)：亚热带森林群落多样性形成与维持机制，项目负责人。(Project title: Formation and maintenance mechanism of subtropical forest community diversity)
5. 2018.01－2022.12中国科学院战略性先导科技专项(A类) 地球大数据科学工程：生物多样性与生态安全（XDA19050000），专题负责人。(Project title: Biodiversity and ecological security)
6. 2018.07－2019.12 中国科学院十三五信息化专项：科学大数据工程（一期）－DarwinTree：面向系统发育研究特色数据库，课题负责人。(Project title: The project of science big data)
7. 2017.01－2025.01国家重要野生植物种质资源共享服务平台项目：DNA材料库的构建，子课题负责人。(Project title: Building DNA material library)
8.2016.01－2020.01 中国科学院国际研究发展项目(SAJC201613)：热带东非被子植物生命之树重建与适应性进化机制研究，项目负责人。(Project title: The tree of life and adaptive evolution of angiosperms in Tropical East Africa)
9. 2016.01－2020.12 国家自然科学基金委重大项目(31590822)：中国-喜马拉雅植物区系分化中心的形成和散布机制，第二课题负责人。(Project title: Formation and dispersal mechanism of diversification centers in China-Himalayan flora)
10. 2015.01－2019.12国家自然科学基金委中美生物多样性Three Dimension国际合作项目(31461123001)：东亚-北美间断分布森林群落生物多样性形成的地史制约、局域适应和种间互作研究，专题负责人。(Project title: The geographical history, local adaptation and interspecific interaction for biodiversity formation in Eastern Asian-North American disjunct forest communities)
11. 2014.01－2018.12 科技部国家重大科学研究计划项目(2014CB954100)：西南山地典型生态系统植物多样性对气候变化的响应，第一课题负责人。(Project title: Response of plant diversity to climate change in typical mountain ecosystems of Southwest China)
12. 2013.09－2016.09 中国科学院国际合作局对外合作重点项目(GJH Z201321)：印度尼西亚热带植物分类调查与生命之树重建，子课题负责人。(Project title: Taxonomic investigation and tree of life reconstruction of tropical plants in Indonesia)
13. 2013.09－2014.05 中国科学院发展中国家访问学者计划(2013FFSA0004)：被子植物蔷薇类(rodids)的系统发育学研究，国内合作者 (国外合作者：科哈特科技大学Rehan Naeem博士，Kohat University of Science and Technology)。(Project title: Phylogeny of rodids)
14. 2013.01－2016.12 中国科学院海外科教基地建设计划：肯尼亚被子植物属的生命之树构建，课题负责人。(Project title: Tree of life for the genera of Kenyan Angiosperm)
15. 2012.01－2016.12 国家高技术研究发展计划(863 计划)资助项目(2012AA021602)：珍稀物种资源样品采集与鉴定研究，子课题负责人。(Project title: Collection and identification of rare species)
16. 2012.01－2016.12 国家自然科学基金委基金面上项目(31270268)：蔷薇类COM分支的系统发育研究，主持人。(Project title: Phylogenetic of the COM branch in rosids)
17. 2011 中国科学院外国专家特聘研究员计划项目（2011T1S24）：分子系统学和进化遗传学，国内合作者 (国外合作者Douglas E. Soltis教授)。(Project title: Molecular systematics and evolutionary genetics)
18. 2010.01－2013.12国家自然科学基金委海峡两岸合作项目(31061160184)：东喜马拉雅-横断山与台湾种子植物区系的联系与进化机制研究，参加者。(Project title: The relationship and evolutionary mechanism of seed plant flora between eastern Himalaya-Hengduan Mountains and Taiwan)
19. 2009.01－2011.12 中国科学院大工程装置依托项目(2009-LSF-GBOWS-01)：中国种子DNA条形码，参加者。(Project title: DNA barcoding of Chinese plant seeds)
20. 2009.01－2012.12 国家自然科学基金委基金重点项目(40830209)：生命之树共生固氮支系重要类群的起源、分化和环境制约，子课题负责人。(Project title: Origin, differentiation and environmental constraints of important groups of symbiotic nitrogen fixing branches of tree of life)
21. 2007.01－2011.12 科技部国家重点基础研究发展计划项目（973计划 2007CB411600）：中国-喜马拉雅地区生物多样性演变和保护研究，子课题负责人。(Project title: Evolution and conservation of biodiversity in Sino-Himalayan region)
22. 2007.01－2010.12 中国科学院知识创新方向性项目(KSCX2-YW-R-136)：动植物若干类群的系统发育和分子进化，主持人。(Project title: Phylogenetic reconstruction and molecular evolution of several plant and animal taxa)
23. 2007.07-2007.09中国科学院-美国密苏里植物园合作项目：中国植物志—葡萄科，爬山虎属的修订，在法国自然历史博物馆，英国邱园和爱丁堡植物园，荷兰莱顿标本馆和俄罗斯圣彼得堡卡马洛夫植物研究所访问研究。(Project title: Flora of China-Vitaceae，revision of Parthenocissus)
24. 2006－2010 美国科学基金会(NSF) COLLABORATIVE RESEARCH项目：解析被子植物主要分支以及12个最棘手的分支，国际合作者。(Project title: Resolving the Trunk of the Angiosperm Tree and Twelve of its Thorniest Branches)
25. 2006.01－2009.12 国家自然科学基金委重点项目(30530090)：基部真双子叶植物中A、B、C和E类MADS-box基因的进化，子课题负责人。 (Project title: Evolution of class A, B, C and E MADS box genes in basal Eudicots)
26. 2004.01－2006.12国家自然科学基金委面上项目(30370094)：桤木属的系统学和分子生物地理学研究，主持人。(Project title: Taxonomy and molecular biogeography of Alnus)
27. 2003.01－2005.12 国家自然科学基金委海外青年学者合作研究基金项目(30228004)：陆地植物的分子系统发育和进化，国内合作者。(Project title: Molecular phylogenetics of cryptogamic land plants – with special emphasis and major genera of East Asia)
28. 2001－2006 美国科学基金会(NSF) Research Coordination Network (RCN)项目：被子植物现生类群和化石类群系统发育树的构建，国际合作者。(Project title: Deep Time: A Comprehensive Phylogenetic Tree of Living and Fossil Angiosperms)
29. 2001.01－2005.12 中国科学院知识创新工程信息化建设专项(INF105-SDB-09)：中国植物数据库和图像库，主持人。(Project title: Chinese plant database and image database)
30. 2000.01－2003.12国家自然科学基金委重点项目(39930020)：东亚植物区系中主要特征成分和重要类群的形成和发展，第二主持人。(Project title: origins and evolution of characteristic elements and important taxa in East Asian flora)
31. 2000.01－2002.12国家自然科学基金委面上项目(39970057)：高等金缕梅类植物的分子系统发育，主持人。(Project title: Molecular phylogenetics of “higher” hamamelids)
32. 1997.01－2000.12 国家自然科学基金委重点项目(39630030)：原始被子植物的结构、分化和演化，第二主持人。(Project title: Structure, diversification and evolution of primitive angiosperms)
33. 1996.01－1998.12 国家自然科学基金委面上项目(39670056)：桦木科植物的分子系统学研究，主持人。(Project title: Molecular systematics of the Betulaceae)
34. 1996.01－2000.12 中国科学院高技术研究与发展重点项目(SDB95-06)：中国植物数据库，主持人。(Project title: Chinese plant database)
35. 1995－1996 美国地理学会项目USA National Geographic Society Grant (No. 5523-95)：三峡库区植物调查和生物多样性研究。(Project title: Botanical inventory and biodiversity along the Three Gorges, Yangtze River, China.)
36. 1993.01－1995.12 国家自然科学基金委青年基金项目(39200009)：桦木科植物的起源和分化，主持人。(Project title: Character evolution and cladistic biogeography of the Betulaceae)
国际合作
1993.8.28-9.3 参加日本横滨第十五届国际植物学大会。
1995.2.22-6.22 博士后，佛罗里达大学 (合作者：Prof. Steven R. Manchester)。
1999.4.20-6.14 访问学者，苏黎世大学系统植物学研究所，中国科学院资助， (合作者： Prof. Yin-Long Qiu)。
1999.7.27-8.16 参加美国密苏里第十六届国际植物学大会。
2000.2.24-2000.3.30 访问学者， Jodrell Laboratory and the Herbarium, Royal Botanic Gardens Kew, supported by a joint Chinese Academy of Sciences/Kew project (No. Q762) (PIs: Profs. Simon J. Owens and Haining Qin; 合作者： Prof. Mark W. Chase)。
2001-2006 美国科学基金会（NSF）Research Coordination Network (RCN) 项目“Deep Time: A Comprehensive Phylogenetic Tree of Living and Fossil Angiosperms”的国际合作者。该项目由D. E. Soltis, P. S. Soltis, P. Herendeen和D. L. Dilcher主持。其他主要参加者为：Mark Chase, Ray Christopher, Peter Crane, James Doyle, Peter Endress, Sara Hoot, Walter Judd, Richard Lupia, Susana Magallon Puebla, Steven Manchester, Yin-Long Qiu, Michael Sanderson, Youngbae Suh, Ge Sun, David Taylor。我们研究组参加“壳斗目（Fagales）形态、化石和DNA序列证据整合研究”。
2006-今 美国科学基金会（NSF） COLLABORATIVE RESEARCH 项目“Atol: Resolving the Trunk of the Angiosperm Tree and Twelve of its Thorniest Branches”的国际合作者。该项目主持人是D. E. Soltis，其他主要参加者包括Reed Beeman, Nico Cellinese, Chuck Davis, Michael Donoghue, Khidir Hilu, Walt Judd, Steve Manchester, Yin-Long Qiu, Mike Sanderson, Ken Sytsma, Pam Soltis, Ken Wurdack。我们研究组参加“用线粒体基因研究蔷薇类的系统发育”。
2007.7-9 中国科学院—美国密苏里植物园合作项目：Flora of China- Vitaceae，revision of Parthenocissus。在法国自然历史博物馆，英国邱园和爱丁堡植物园，荷兰莱顿标本馆和俄罗斯圣彼得堡卡马洛夫植物研究所访问研究。
2007.9.29-10.15 对澳大利亚波斯皇家公园和植物园，悉尼皇家植物园和堪培拉植物生物多样性研究中心访问研究, supported by Chinese Academy of Sciences and Australian Academy of Science Scientific Cooperation Program。
2007.7.8-8.31 Visit to Museum of Natural History (Paris), Royal Botanic Gardens Kew (London), Royal Botanic Garden Edinburgh, and Leiden Herbarium, supported by CAS-Missouri Botanical Garden project: Flora of China-Vitaceae (revision ofParthenocissus), (PIs: Profs. Zhengyi Wu, Peter Ravan, and Deyuan Hong)。
2007.10.27-11.05 Visit to the Herbarium, Komarov Institute of Botany, St. Petersburg, Russia, , supported by CAS-Missouri Botanical Garden project: Flora of China-Vitaceae (revision of Parthenocissus) , (PIs: Profs. Zhengyi Wu, Peter Ravan, and Deyuan Hong)。
2010.8.24-10.17 访问学者，华盛顿史密森国家自然历史博物馆, supported by fellowship for a Short-Term Visiting Scientist at Smithsonian (合作者: Prof. Jun Wen). Project title: Collaborative research on monographic studies of Parthenocissus。
| 入学时间 | 姓 名 | 学科 | 学位 | 导师 | 毕业时间 |
| 2001 | 张原 | 植物学 | 硕士 | 陈之端 | 2004 |
| 2001 | 任辉 | 生态学 | 硕士 | 王仁卿、陈之端 | 2004（合培培养、学位授予：山东大学） |
| 1993 | 冯旻 | 植物学 | 博士 | 路安民、陈之端 | 1998 |
| 1996 | 刘忠 | 植物学 | 博士 | 路安民、陈之端 | 2000 |
| 1999 | 李睿琦 | 植物学 | 博士 | 陈之端、路安民 | 2004 |
| 2001 | 朱昱苹 | 植物学 | 博士 | 陈之端、张志耘 | 2006 |
| 2001 | 刘阳 | 植物学 | 博士 | 陈之端、贾渝 | 2007 |
| 2001 | 刘红梅 | 植物学 | 博士 | 陈之端、张宪春 | 2007 |
| 2002 | 山红艳 | 植物学 | 博士 | 陈之端、孟征、孔宏智 | 2006 |
| 2002 | 王伟 | 植物学 | 博士 | 陈之端、路安民 | 2007 |
| 2003 | 袁良琛 | 植物学 | 博士 | 陈之端、罗毅波 | 2007 |
| 2003 | 苏坤梅 | 植物学 | 博士 | 陈之端、孟征、孔宏智 | 2007 |
| 2004 | 刘翠晶 | 植物学 | 博士 | 陈之端、孔宏智 | 2008 |
| 2004 | 樊建华 | 植物学 | 博士 | 陈之端、罗毅波 | 2010 |
| 2005 | 朱新宇 | 植物学 | 博士 | 陈之端 | 2008 |
| 2005 | 任保青 | 植物学 | 博士 | 陈之端 | 2010 |
| 2005 | 张剑 | 植物学 | 博士 | 陈之端、孔宏智 | 2010 |
| 2005 | 胡瑾 | 植物学 | 博士 | 陈之端、孔宏智 | 2010 |
| 2006 | 向小果 | 植物学 | 博士 | 陈之端 | 2010 |
| 2006 | 林若竹 | 植物学 | 博士 | 陈之端 | 2011 |
| 2008 | 谷婧 | 生药学 | 博士 | 肖培根、陈之端 | 2011（合培培养、学位授予： 中国医学科学院） |
| 2006 | 董晓宇 | 植物学 | 硕博生 | 陈之端 | |
| 2008 | 鲁丽敏 | 植物学 | 硕博生 | 陈之端 | |
| 2008 | 李洪雷 | 植物学 | 硕博生 | 陈之端 | |
| 2008 | 苏俊霞 | 植物学 | 博士生 | 陈之端 | |
| 2009 | 孙苗 | 植物学 | 博士生 | 陈之端 | |
| 2009 | 杨拓 | 植物学 | 硕博生 | 陈之端 | |
| 2010 | 张景博 | 植物学 | 博士生 | 陈之端 | |
| 2010 | 陈闽 | 植物学 | 硕博生 | 陈之端 | |
| 2012 | 牛艳婷 | 植物学 | 硕博士 | 陈之端 |
一、被子植物大类群系统发育关系研究（Macrosystematics）
植物大类群的系统发育，即大系统，是指科级及其以上阶元水平上分类群之间的系统演化关系。近年来，随着植物分子系统学的发展，人们先后在叶绿体基因组、核基因组及线粒体基因组均发现了一些进化速率较慢，适合用于科级以上分类等级研究的基因，如叶绿体基因rbcL、atpB、ndhF, 核核糖体18S rRNA和26S rRNA基因，以及线粒体基因matR和atp１等。由于这些基因使得大规模的取样成为可能，因此可以非常容易地在目、亚纲水平、以至整个被子植物中对众多科之间的系统关系进行研究。这种研究可以较为有效地确定一些系统位置不定类群的归属；以及研究那些不为单系的一些科的系统发育关系。目前，rbcL基因序列已成功地用于整个种子植物的系统发育，可以同时对近3000种植物进行比较，在原来形态学研究的基础上，得到了一系列非常重要的结论，为我们深入地理解被子植物各大类群之间的关系提供了大量证据。我们发现，原来认为一些互不相干的类群却紧密地结合在一起，而一些过去被认为较近的类群却并不相干。
自1997年，我们开始用形态结合分子生物学的方法研究大类群之间的关系，如先后对中国特有的马尾树科、分类地位不明的五福花科、壳斗目、续断目、蔷薇类进行了探讨，取得了有意义的证据。1998年，我作为年轻一代植物分类学的后学和老一辈植物学家吴征镒、汤彦承、路安民共同发表了“试论木兰植物门的一级分类------一个被子植物八纲系统的新方案”，最近又发表了“被子植物的一个多系－多期－多域新分类系统总览”（吴征镒、路安民、汤彦承、陈之端、李德铢，2002）。1999年，在瑞士苏黎世大学Qiu Yin-Long教授的分子系统学实验室，我参与了同时用二个叶绿体基因、一个核基因和二个线粒体基因（共约9000个碱基对）来研究基部被子植物各科之间的关系，令人信服地提出ANITA代表了最早的现存的被子植物，研究结果发表在Nature和International Journal of Plant Science上（Qiu et al., 1999, 2000）。我们开展的一个国家自然科学基金课题 “高等金缕梅类植物的分子系统发育和进化”，完成用六个基因的核苷酸序列探讨该类群的系统发育（Li et al., 2004）。同时，利用线粒体基因matR研究高等金缕梅类各科以及与之有关的其他蔷薇类群之间的关系，涉及130余科。该项工作在英国邱园Mark W. Chase教授的分子系统学实验室和我们的系统和进化植物学国家重点实验室取得了大量数据，完成了177种植物matR基因测序工作。结果显示，该基因对于蔷薇类的目级分类特别有效，并确定了一些中国特有类群的系统位置（Zhu et al., 2007）。近年来，我们课题组还采用多个基因，对桦木科和续断目等进行了深入研究，结果分别发表在American Journal of Botany和Molecular Phylogenetics and Evolution等国际学术刊物上（Chen et al., 1999；Zhang et al., 2003）。2002年，与美国密西根大学的仇寅龙博士、本所张宪春和贾渝先生合作，得到国家自然科学基金委海外杰出青年基金项目资助，利用多个基因对40个苔藓和蕨类植物特有属展开工作，合作研究结果发表在Proceedings of the National Academy of Sciences USA，Annals of the Missouri Botanical Garden，International Journal of Plant Sciences（Qiu et al., 2006；Li et al., 2007；Liu et al., 2008）。
二、在属级水平上的分子生物地理学研究（Molecular Biogeography）
在属级水平上，我们采用整合形态、分子和地理的方法探讨一个属或关系非常密切的几个属中不同类群之间的关系、起源和分化的式样。对于那些化石证据较为可靠和丰富的类群，我们还结合古植物学证据研究类群起源和分歧的时间，以及分化的次序，并与分子钟提供的时间相互印证。在此类研究中，我们首先在形态分类学研究的基础上，用一至几个适合用于属内研究的基因序列重建各种类之间的系统发育关系，继而结合各终端类群的地理分布式样及类群分布的各地球板块离合时间，探讨属的起源地、起源时间、散布路线和现代分布式样形成的原因。同时通过大量类群分子生物地理学的迭合分析，还可以发现植物演化过程中所发生的一些大的一般性的地理分布式样，形态进化和分子进化的速率，以及与之有关的地质事件和气候变迁。
从1995年起，我们课题组和美国佛罗里达大学的古植物学家Steven R. Manchester教授和David L. Dilcher院士一直保持着实质性的合作，通过古今结合，形态与分子方法结合对“高等”金缕梅类的科进行细致的研究。目前，在分子生物地理学方面，本课题组还对五味子科，金粟兰科，菊科毛冠菊属，桦木科桤木属，小檗科鬼臼亚科和茄科天仙子亚族等类群进行了研究。在国家基金委重点项目“东亚植物区系中主要特征成分和重要类群的形成和发展”中，我们承担了其中的分子生物地理学部分，除上述属外，还对一些环太平洋分布的科属，如木通科、清风藤科泡花树属，以及代表其他一些重要分布式样的属，如壳斗科水青冈属、鼠李科马甲子属、Melanthiaceae的岩菖蒲属和藜芦属开展研究。
三、形态性状的进化发育生物学研究（Evolutionary Developmental Biology）
自林奈时代以来的二百多年里，人们对各种生物的形态学特征的了解已是相当的全面、细致和深入。近十几年来，分子系统学的迅猛发展可使我们非常有效地研究各种基因在不同分类群的核苷酸序列变异。然而分子性状和形态性状，即基因型和表型之间仍然存在着不可逾越的鸿沟，目前，我们尚不能从分子水平上对大多数类群中的大量的形态学性状进行解释。令人兴奋地是，近年来随着越来越多植物叶绿体基因组、线粒体基因组和核基因组的全序列测定的完成，人们对基因功能的认识随之增多。特别是控制花发育的ABC模型的提出，让我们看到了利用发育生物学手段研究进化问题是一个广阔的领域。尽管目前在世界范围内Evo-Devo研究仍处在初期发展阶段，但它预示的前景是多少代系统与进化生物学家所梦寐以求的。填补基因型和表型之间的鸿沟，为我们进一步揭开形形色色生物界的起源和演化的奥秘，同时也为人类更好地开发和利用植物资源带来了无限希望。
本课题组曾在扫描电镜下，观察研究了各类植物花器官的原基形成和分化过程，已注意到了与大类群起源有关的一些关键性状在不同分类群中的变异。在此基础上，我们与本所发育中心的孟征研究员合作，选择金粟兰、五味子、木通、小檗、领春木、葡萄等被子植物各大分支的代表植物，研究在花各发育阶段与花被、心皮等性状分化和变异的有关基因，了解这些基因的进化与植物系统发育之间的关系。这些工作的目的首先是在我们的工作中建立起进化发育生物学的方法，以期将来能够利用这种方法对各类性状，甚至包括一些营养性状开展深入的研究。目前，该项工作在国家自然科学基金委创新群体项目和中科院知识创新重要方向性项目的资助下已取得了一定的进展。目前，已与孔宏智研究员和孟征研究员合作，对控制花部器官发育的关键基因进行了研究，探讨了关键花部性状起源和演化的分子机理。目前在Molecular Biology and Evolution，New Phytologist，Molecular Phylogenetics and Evolution 和 Development Genes and Evolution等刊物上发表论文四篇。
二十多年来，课题组在路安民、汤彦承和潘开玉等研究员的组织领导下，在被子植物大系统研究方面，在理论上具有自己的研究思路，在实践上建立了一整套比较形态学（广义，包括花形态发生、解剖、胚胎、孢粉学等）和分子系统学实验方法。积累了丰富经验，取得了丰硕成果。如今这个研究集体在尊重传统的基础上，通过广泛的国内外合作，不断探索新的研究方向，使得研究不仅兴趣盎然，而且充满了挑战和希望。
获奖
2006 云南省自然科学奖一等奖
【东亚植物区系中主要特征成分和重要类群的形成和发展，个人排名第二】
研究论文（注*为通讯作者）
2020 (220)
220. 陈之端, 路安民, 刘冰, 叶建飞. 2020. 中国维管植物生命之树. 科学出版社, 北京.
219. Lu Limin, Hu Haihua, Peng Danxiao, Liu Bing, Ye Jianfei, Yang Tuo, Li Honglei, Sun miao, Smith Stephen A., Soltis Pamela S, Soltis Douglas E, Chen Zhiduan*. 2020. Noise does not equal bias in assessing the evolutionary history of the angiosperm flora of China: A response to Qian (2019). Journal of Biogeography, in press.
218. Hu Haihua1, Liu Bing1, Liang Yishuo, Ye Jianfei, Saddam Saqib, Meng Zhen, Lu Limin*, Chen Zhiduan*. 2020. An updated Chinese vascular plant tree of life: Phylogenetic diversity hotspots revisited. Journal of Systematics and Evolution, in press.
217. Su Junxia1, Dong Congcong1, Niu Yanting, Lu Limin, Xu Chao, Liu Bing, Zhou Shiliang, Lu Anming, Zhu Yuping, Wen Jun*, Chen Zhiduan*. 2020. Molecular phylogeny and species delimitation of Stachyuraceae: advocating a herbarium specimen-based phylogenomic approach in resolving species boundaries. Journal of Systematics and Evolution, in press.
216. Sun Miao1*, Folk Ryan A1*, Gitzendanner Matthew A, Soltis Pamela S, Chen Zhiduan, Soltis Douglas E, Guralnick Robert P*. 2020. Recent accelerated diversification in rosids occurred outside the tropics. Nature Communications, in press.
215. Sun Miao1, Folk Ryan A., Gitzendanner Matthew A., Soltis Pamela S, Chen Zhiduan, Soltis Douglas E, Guralnick Robert P. 2020. Estimating rates and patterns of diversification with incomplete sampling: A case study in the rosids. American Journal of Botany, 107(6): 1-15.
214. Zhang Jian1, Fu Xinxing1, Li Ruiqing1, Zhao Xiang1, Liu Yang1, Li Minghe1, Zwaenepoel Arthur1, Ma Hong, Goffinet Bernard, Guan Yanlong, Xue Jianyu, Liao Yiying, Wang Qinfeng, Wang Qinghua, Wang Jieyu, Zhang Guoqiang, Wang Zhiwen, Jia Yu, Wang Meizhi, Dong Shanshan, Yang Jianfen, Jiao Yuannian, Guo Yalong, Kong Hongzhi, Lu Anming, Yang Huanming, Zhang Shouzhou*, Van de Peer Yves*, Liu Zhongjan*, Chen Zhiduan*. 2020. The hornwort genome and early land plant evolution. Nature Plants 6: 107-118.
213. Ye Jianfei1, Liu Yun1, Chen Zhiduan*. 2019. Dramatic impact of metric choice on biogeographical regionalization. Plant Diversity 42: 67-73
212. Sun Miao1*, Folk Ryan A1*, Gitzendanner Matthew A, Soltis Pamela S, Chen Zhiduan, Soltis Douglas S, Guralnick Robert P*. 2020. Estimating rates and patterns of diversification with incomplete sampling: a case study in the rosids. American Journal of Botany 107(6): 895-909.
2019 (211)
211. Ye Jianfei, Lu Limin, Liu Bing, Yang Tuo, Zhang Jinlong, Hu Haihua, Li Rong, Lu Anming, Liu Huiyuan, Mao Lingfeng*, Chen Zhiduan*. 2019. Phylogenetic delineation of regional biota: A case study of the Chinese flora. Molecular Phylogenetics and Evolution 135: 222-229.
210. Niu Yanting1, Barrett Russell L*, Zhang Zhuzhi, Lu Limin*, Chen Zhiduan. 2019. Taxonomic revision of Triplostegia (Caprifoliaceae: Dipsacales). Phytotaxa 392 (1): 019-032.
209. Liu Bing, Tan Yunhong, Liu Su, Olmstead Richard G, Zhang Mindao, Chen Zhiduan, Joshee Nirmal, Vaidya Brajesh N, Chung Richard CK, Li Bo*. 2019. Phylogenetic relationships of Cyrtandromoea and Wightia revisited: A new tribe in Phrymaceae and a new family in Lamiales. Journal of Systematics and Evolution 58(1): 1-17.
208. Fu Xinxing, Zhang Jian*, Zhang Guoqiang, Liu Zhongjian, Chen Zhiduan. 2019. Insights into the origin and evolution of plant sigma factors. Journal of Systematics and Evolution -.
207. Huang Youjun, Xiao Lihong*, Zhang Zhongren, Zhang Rui, Wang Zhengjia, Huang Chunying, Huang Ren, Luan Yumeng, Fan Tongqiang, Wang Jianhua, Shen Chen, Zhang Shenmei, Wang Xinwang, Jennifer Randall, Zheng Bingsong, Wu Jiasheng, Zhang Qixiang, Xia Guohua, Xu Chuanmei, Chen Ming, Zhang Liangsheng, Jiang Wenkai, Gao Lizhi, Chen Zhiduan, Leslie Charles A, Grauke LJ, Huang Jianqin*. 2019. The genomes of pecan and Chinese hickory provide insights into Carya evolution and nut nutrition. GigaScience 8(5): 1-17.
206. Dong Yibo1, Chen Shichao1, Cheng Shifeng, Zhou Wenbin, Ma Qing, Chen Zhiduan, Fu Chengxin, Liu Xin*, Zhao Yunpeng*, Soltis Pamela S*, Wong Gane KS*, Soltis Douglas E*, Jenny Xiang*. 2019. Natural selection and repeated patterns of molecular evolution following allopatric divergence. eLife 8: e45199.
205. 钱前, 漆小泉, 林荣呈, 杨淑华, 董爱武, 左建儒, 陈凡, 萧浪涛, 顾红雅, 陈之端, 白永飞, 王小菁, 王雷, 姜里文, 种康*, 王台*. 2019. 2018年中国植物科学若干领域重要研究进展. 植物学报 54(4): 405-440.
204. 鲁丽敏, 胡海花, 彭丹晓, 陈之端*. 2019. 博物馆与摇篮——记中国被子植物区系进化历史研究. 前沿科学 13(1): 77-79.
203. 鲁丽敏, 胡海花, 彭丹晓, 陈之端*. 2019. 中国被子植物区系进化历史研究. 73-91. 中国科协生命科学学会联合体（编），2018年中国生命科学十大进展. 北京：中国科学技术出版社.
202. 鲁丽敏, 陈之端*, 路安民. 2019. 系统生物学家最终能得到完全一致的生命之树吗？757-761. 科学通报 高福（主编）, Science 125个前沿问题解读（下册）. 北京：科学出版社.
201. 李德铢, 陈之端, 王红, 路安民. 2019. 中国维管植物科属志（1-5卷）. 科学出版社, 北京.
2018 (200)
200. Dong Shanshan, Xue Jiayu, Zhang Shouzhou, Zhang Li, Wu Hong, Chen Zhiduan, Bernard Goffinet , Liu Yang*. 2018. Complete mitochondrial genome sequence of Anthoceros angustus: conservative evolution of the mitogenomes in hornworts. The Bryologist 121(1): 014-022.
199. Habib Sadaf, Dang Viet C, Ickert-Bond Stefanie M, Wen Jun, Chen Zhiduan, Lu Limin*. 2018. Evolutionary trends in Tetrastigma (Vitaceae): Morphological diversity and taxonomic implications. Journal of Systematics and Evolution 56(4): 360-373.
198. Le Chi Toan1, Liu Bing1, Barrett Russell L, Lu Limin*, Wen J, Chen Zhiduan. 2018. Phylogeny and a new tribal classification of Opiliaceae (Santalales) based on molecular and morphological evidence. Journal of Systematics and Evolution 56: 56-66.
197. Lin Qinwen1, Le Chi Toan1, Njenga Dennis M1, Hao Yunqing1, Liu Bing*, Yu Wentao, Chen Zhiduan. 2018. Bothriospermum longistylum sp. nov. (Boraginaceae) from north China. Nordic Journal of Botany 36(4): 1-8.
196. Liu Bing1, Le Chi Toan1, Barrett Russell L, Nickrent Daniel L, Chen Zhiduan, Lu Limin*, Romina Vidal-Russell*. 2018. Historical biogeography of Loranthaceae (Santalales): Diversification agrees with emergence of tropical forests and radiation of songbirds. Molecular Phylogenetics and Evolution 124: 199-212.
195. Lu Limin, Cox Cymon J, Mathews S, Wang Wei, Wen Jun*, Chen Zhiduan*. 2018. Optimal data partitioning, multispecies coalescent, and Bayesian concordance analyses resolve early divergences of the grape family (Vitaceae). Cladistics 34: 57-77.
194. Lu Limin1, Mao Lingfeng1, Yang Tuo1, Ye Jianfei1, Liu Bing1, Li Honglei1, Sun Miao1, Miller Joseph T, Mathews Sarah, Hu Haihua, Niu Yanting, Peng Danxiao, Chen Youhua, Smith Stephen A, Chen Min, Xiang Kunli, Le Chi Toan, Dang Viet Cuong, Lu Anming, Soltis Pamela S*, Soltis Douglas E*, Li Jianhua *, Zhiduan Chen*. 2018. Evolutionary History of the Angiosperm Flora of China. Nature 554: 234-238.
193. Niu Yanting, Jabbour Florian, Barrett Russell L., Ye Jianfei, Zhang Zhizhu, Lu Kaiqing, Lu Limin*, Chen Zhiduan. 2018. Combining complete chloroplast genome sequences with target loci data and morphology to resolve species limits in Triplostegia (Caprifoliaceae). Molecular Phylogenetics and Evolution 129: 15-26.
192. Niu Yanting, Ye Jianfei, Zhang Jinlong, Wan Jizhong, Yang Tuo, Wei Xiaoxin, Lu Limin*, Li Jianhua, Chen Zhiduan. 2018. Long-distance dispersal or post-glacial contraction? Insights into disjunction between Himalaya-Hengduan Mountain and Taiwan in a cold-adapted herbaceous genus, Triplostegia. Ecology and Evolution 8: 1131-1146.
191. Wen Jun*. Lu Limin, Nie Zelong, Liu Xiuqun, Zhang Ning, Ickert-Bond Stefanie, Jean Gerrath, Manchester Steven R, John Boggan, Chen Zhiduan. 2018. A new phylogenetic tribal classification of the grape family (Vitaceae). Journal of Systematics and Evolution 56 (4): 262-272.
190. Wen Jun*, Lu Limin*, Hsu Tsai-Wen, Dang Viet-Cuong, Habib Sadaf, Boggan John K, Okada Hiroshi, Chen I-Ju, Chen Zhiduan. 2018. Pseudocayratia, a new genus of Vitaceae from China and Japan with two new species and three new combinations. Journal of Systematics and Evolution 56(4): 374-393.
189. Wu Shengdan, Zhang Linjiang*, Lin Li, Yu Shengxiang, Chen Zhiduan, Wang Wei*. 2018. Insights into the historical assembly of global dryland floras: the diversification of Zygophyllaceae. BMC Evolutionary Biology 18: 166.
188. Yang Teng, Tedersoo Leho, Soltis Pamela S, Soltis Douglas E, Gilbert Jack A, Sun Miao, Shi Yu, Wang Hongfei, Li Yuntao, Zhang Jian, Chen Zhiduan, Lin Hanyang, Zhao Yunpeng, Fu Chengxin, Chu Haiyan*. 2018. Phylogenetic imprint of woody plants on the soil mycobiome in natural mountain forests of eastern China. The ISME Journal 13: 686-697.
187. Yang Tuo, Lu Limin, Wang Wei, Li Jianhua, Manchester Steven R, Wen Jun, Chen Zhiduan*. 2018. Boreotropical range expansion and long-distance dispersal explain two amphi-Pacific tropical disjunctions in Sabiaceae. Molecular Phylogenetics and Evolution 124: 181-191.
186. Zhu Junyi*, Zhang Lifan, Ren Baoqing, Chen Min, Li Ruiqi, Zhou You, Liang Yu, Li Jianhua*, Chen Zhiduan*. 2018. Comparative flower and inflorescence organogenesis among genera of Betulaceae: Implications for phylogenetic relationships. Botanical Review 84: 79-98.
185. 陈凡, 钱前, 王台, 董爱武, 漆小泉, 左建儒, 杨淑华, 林荣呈, 萧浪涛, 顾红雅, 陈之端, 姜里文, 白永飞, 孔宏智, 种康. 2018. 2017年中国植物科学若干领域重要研究进展. 植物学报 53(4): 391-440.
184. 陈之端*，李德铢. 2018. 系统发育多样性和生物多样性保护. 科学 70: 22-25.
183. 李德铢, 陈之端, 王红, 路安民. 2018. 中国维管植物科属词典. 科学出版社, 北京.
2017 (182)
182. 彭丹晓，鲁丽敏*，陈之端. 2017. 区域生命之树及其在植物区系研究中的应用. 生物多样性 25(2): 156-162.
181. 王伟，张晓霞，陈之端，路安民*. 2017. 被子植物APG分类系统评论. 生物多样性 25(4): 1-10.
180. Habib Sadaf1, Dang Viet C1, Ickert-Bond Stefanie M, Zhang Jinlong, Lu Limin *, Wen Jun, Chen Zhiduan. 2017. Robust phylogeny of Tetrastigma (Vitaceae) based on ten plastid DNA regions: Implications for infrageneric classification and seed character evolution. Frontiers in Plant Science 8: 590.
179. Wang Wei*, Ortiz Rosa del C, Jacques Frédéric M B, Chung Shihwen, Liu Yang, Xiang Xiaoguo, Chen Zhiduan. 2017. New insights into the phylogeny of Burasaieae (Menispermaceae) with the recognition of a new genus and emphasis on the southern Taiwanese and mainland Chinese disjunction. Molecular Phylogenetics and Evolution 109: 11-20.
178. Dang Viet C, Nguyen Van H, Dao Baohui,Yang Wanliu, Li Faliang, Yang Xinkai, Wen Jun, Chen Zhiduan, Lu Limin*. 2017. A New Species and New Records of Cyphostemma (Vitaceae) from China and Vietnam based on Morphological and Molecular Evidence. Systematic Botany 42: 449-457.
2016 (177)
177. Chen Zhiduan, Lu Anming, Zhang Shouzhou, Wang Qingfeng, Liu Zhongjian, Li Dezhu*, Ma Hong, Li Jianhua, Soltis Douglas E, Soltis Pamela S, Wen Jun, China Phylogeny Consortium. 2016. The tree of life: China project. Journal of Systematics and Evolution 54(4): 273-276.
176. Chen Zhiduan, Yang Tuo, Lin Li, Lu Limin, Li Honglei, Sun Miao, Liu Bing, Chen Min, Niu Yanting, Ye Jianfei, Cao Zhiyong, Liu Hongmei, Wang Xiaoming, Wang Wei, Zhang Jingbo, Meng Zhen, Cao Wei, Li Jianhui, Wu Shengdan, Zhao Huiling, Liu Zhongjian, Du Zhiyuan, Wang Qingfeng, Guo Jing, Tan Xinxin, Su Junxia, Zhang Linjing, Yang Leilei, Liao Yiying, Li Minghe, Zhang Guoqiang, Chung Shihwen, Zhang Jian, Xiang Kunli, Li Ruiqi, Soltis Douglas E, Soltis Pamela S, Zhou Shiliang, Ran Jinhua, Wang Xiaoquan, Jin Xiaohua, Chen Yousheng, Gao Tiangang, Li Jianhua, Zhang Shouzhou*, Lu Anming*, China Phylogeny Consortium. 2016. Tree of life for the genera of Chinese vascular plants. Journal of Systematics and Evolution 54(4): 277-306.
175. Li Honglei, Wang Wei, Li Ruiqi, Zhang JingBo, Sun Miao, Naeem Rehan, Su Junxia, Xiang Xiaoguo, Mortimer Peter E, Li Dezhu, Hyde Kevin D, Xu Jianchu, Soltis Douglas E, Soltis Pamela S, Li Jianhua, Zhang Shouzhou, Wu Hong, Chen Zhiduan*, Lu Anming*. 2016. Global versus Chinese perspectives on the phylogeny of the N-fixing clade. Journal of Systematics and Evolution 54(4): 392-399.
174. Sun Miao, Naeem Rehan, Su Junxia, Cao Zhiyong, Burleigh J Gordon, Soltis Pamela S, Soltis Douglas E*, Chen Zhiduan*. 2016. Phylogeny of the Rosidae: A dense taxon sampling analysis. Journal of Systematics and Evolution 54(4): 363-391.
173. Ortiz Rosa del C1*, Wang Wei1*, Jacques Frédéric M B1, Chen Zhiduan. 2016. Phylogeny and a revised tribal classification of Menispermaceae based on molecular and morphological data. Taxon 65: 1288-1312.
172. Wang Wei, Dilcher David L*, Sun Ge, Wang Hongshan, Chen Zhiduan. 2016. Accelerated evolution of early angiosperms: Evidence from ranunculalean phylogeny by integrating living and fossil data. Journal of Systematics and Evolution 54(4): 336-341.
171. Yang Leilei, Li Honglei, Wei Lei, Yang Tuo, Kuang Daiyong, Li Minghong, Liao Yiying, Chen Zhiduan*, Wu Hong*, Zhang Shouzhou*. 2016. A supermatrix approach provides a comprehensive genus-level phylogeny for Gentianales. Journal of Systematics and Evolution 54(4): 400-415.
170. Lin Ruozhu, Li Ruiqi, Lu Anming, Zhu Junyi, Chen Zhiduan*. 2016. Comparative flower development of Juglans regia, Cyclocarya paliurus and Engelhardia spicata: homology of floral envelopes in Juglandaceae. Botanical Journal of the Linnean Society 181: 279-293.
169. Lu Limin, Wen Jun*, Chen Zhiduan*. 2016. Cayratia cheniana (Vitaceae): An Endangered New Species Endemic to the Limestone Mountains of Ninh Thuan Province, Vietnam. Systematic Botany 41(1): 49-55.
168. Wang Wei*, Lin Li, Xiang Xiaoguo, Ortiz RC, Liu Yang, Xiang Kunli, Wu Shengdan, Xing Yaowu, Chen Zhiduan*. 2016. The rise of angiosperm-dominated herbaceous floras: Insights from Ranunculaceae. Science Reports 6: 27259.
167. Dang Viet Cuong, Lu Limin*, Nguyen Van Hieu, Habib Sadaf, Barrett Russell L, Chen Zhiduan. 2016. A new record of the genus Yua (Vitaceae) from Vietnam. Phytotaxa 255(3): 274-280.
166. Xiang Kunli, Wu Shengdan,Yu Shengxiang, Liu Yang, Florian Jabbour, Andrey S. Erst, Zhao Liang, Wang Wei*, Chen Zhiduan. 2016. The first comprehensive phylogeny of Coptis (Ranunculaceae) and its implications for character evolution and classification. PLoS ONE 11(4): e0153127.
165. 鲁丽敏, 陈之端*, 路安民. 2016. 系统生物学家最终能得到完全一致的生命之树吗？科学通报 61(9): 958-963.
2015 (164)
164. Sun Miao, Soltis Douglas E *, Soltis Pamela S, Zhu Xinyu, J. Gordon Burleigh, Chen Zhiduan*. 2015. Deep phylogenetic incongruence in the angiosperm clade Rosidae. Molecular Phylogenetics and Evolution 83: 156-166.
163. Zhang Jian1, Chen Min1, Dong Xiaoyu, Lin Ruozhu, Fan Jianhua, Chen Zhiduan*. 2015. Evaluation of four commonly used dna barcoding loci for Chinese medicinal plants of the family Schisandraceae. PLoS ONE 10(5): e0125574.
162. Li Honglei1, Wang Wei1, Peter E. Mortimer, Li Ruiqi, Li Dezhu, Kevin D, Hyde, Xu Jianchu, Soltis Douglas E, Chen Zhiduan*. 2015. Large-scale phylogenetic analyses reveal multiple gains of actinorhizal nitrogen-fixing symbioses in angiosperms associated with climate change. Science Reports 5: 14023.
161. Lin Li, Tang Liang, Bai Yunjun, Tang Zhiyao, Wang Wei*, Chen Zhiduan. 2015. Range expansion and habitat shift triggered elevated diversification of the rice genus (Oryza, Poaceae) during the Pleistocene. BMC Evolutionary Biology 15: 182.
160. Zhu Xiangyun, Chen Zhiduan, Liu Bo. 2015. Species Catalogue of China. Vol. 1, Plants, Spermatophytes (IV): Angiosperms (Paeoniaceae- Polygalaceae). Beijing: Science Press. [朱相云，陈之端，刘博. 2015. 中国生物物种名录. 第一卷，植物, 种子植物（IV）: 被子植物（芍药科-远志科）. 北京: 科学出版社.]
159. 种康, 王台, 钱前, 王小菁, 左建儒, 顾红雅, 姜里文, 陈之端, 白永飞, 杨淑华, 孔宏智, 陈凡，萧浪涛.2015. 2014年中国植物科学若干领域重要研究进展. 植物学报 50(4): 412-4.
158. 赵慧玲, 鲁丽敏, 苏俊霞*, 陈之端. 2015. 基于形态和分子证据对斑果藤族和节蒴木科的系统学研究. 植物学报 50(4): 473-481.
157. Meng Zhen, Dong Hui, Li Jianhui, Chen Zhiduan, Zhou Yuanchun, Wang Xuezhi, Zhang Shouzhou. 2015. Darwintree: A Molecular Data Analysis and Application Environment for Phylogenetic Study. Data Science Journal, 14: 10, pp. 1-10.
2014 (156)
156. 鲁丽敏，孙苗，张景博，李洪雷，林立，杨拓，陈闽，陈之端*. 2014. 生命之树及其应用. 生物多样性 22(2): 3-20.
155. Xiang Xiaoguo, Wang Wei, Li Ruiqi, Liu Yang, Zhou Zhequn, Li Zhenyu, Chen Zhiduan*. 2014. Large-scale phylogenetic analyses reveal fagalean diversification promoted by the interplay of diaspores and environments in the Paleogene. Perspectives in Plant Ecology, Evolution and Systematics 16: 101-110.
154. Wang Wei*, Li Honglei, Chen Zhiduan. 2014. Analysis of plastid and nuclear DNA data in plant phylogenetics-evaluation and improvement. Science China, Life Sciences 57(3): 280-286.
153. Wang Wei*, Li Honglei, Xiang Xiaoguo, Chen Zhiduan. 2014. Revisiting the phylogeny of Ranunculeae: Implications for divergence time estimation and historical biogeography, Journal of Systematics and Evolution 52(5): 551-565.
152. Su Kunmei, Li Zhenhuan, Chen Zhiduan* 2014. CsPl from the perianthless early-diverging Chloranthus spicatus shows function on petal development in Arabidopsis thaliana. Botanical Studies 55: 21.
151. 朱俊义, 张力凡, 沈鹏, 任保青, 梁宇, 陈之端*. 2014. 榛属（桦木科）花序和花的形态发生. 植物分类与资源学报 36(4): 433-442.
150. 朱俊义, 张力凡, 沈鹏, 任保青, 梁宇, 陈之端*. 2014. 桦木科植物花柱适应风媒传粉的特征. 植物学报 49(5): 524-538.
149. 朱俊义, 张力凡, 沈鹏, 任保青, 梁宇, 陈之端*. 2014. 千金榆花序及花器官发育. 植物研究 34(2): 170-176.
148. Li Jianhua*, Jiang Jinhuo, Holly Vander Stel, Austin Homkes, Jeffrey Corajod, Kenneth Brown, Chen Zhiduan. 2014. Phylogenetics and biogeography of Apios (Fabaceae) inferred from sequences of nuclear and plastid genes. International Journal of Plant Sciences 175(7): 764-780.
147. Zeng Jie*, Ren Baoqing, Zhu Junyi, Chen Zhiduan. 2014. Betula hainanensis (Betulaster, Betulaceae), a new species from Hainan Island, China. Annales Botanici Fennici 51: 399-402.
2013 (146)
146. Lu Limin, Wang Wei, Chen Zhiduan*, Wen Jun*, 2013. Phylogeny of the non-monophyletic Cayratia Juss. (Vitaceae) and implications for character evolution and biogeography. Molecular Phylogenetics and Evolution 68: 502-515.
145. Zhang Jingbo, Li Ruiqi, Xiang Xiaoguo, Manchester Steven R, Lin Li, Wang Wei, Wen Jun*, Chen Zhiduan*. 2013. Integrated fossil and molecular data reveal the biogeographic diversification of the Eastern Asian-Eastern North American disjunct hickory genus (Carya Nutt.). PLoS ONE 8(7): e70449.
144. Li Honglei, Wang Wei*, Lin Li, Zhu Xiangyun, Li Jianhua, Zhu Xinyu, Chen Zhiduan. 2013. Diversification of the phaseoloid legumes: Effects of climate change, range expansion and habit shift. Frontiers in Plant Science 4: 386.
143. Wang Wei*, Liu Yang, Yu Shengxiang, Gao Tiangang, Chen Zhiduan. 2013. Gymnaconitum, a new genus of Ranunculaceae endemic to the Qinghai-Tibetan Plateau. Taxon 62: 713-722.
142. Chen Zhiduan, Li Dezhu*. 2013. On Barcode of Life and Tree of Life. Plant Diversity and Resources 35(6): 675-681. [陈之端, 李德铢*. 2013. 生命条形码与生命之树. 植物分类与资源学报 35(6): 675-681.]
2012 (141)
141. Wang Wei1, Ortiz Rosa Del C. 1, Jacques Frédéric M.B.1, Xiang Xiaoguo, Li Honglei, Lin Li, Li Ruiqi, Liu Yang, Soltis Pamela S, Soltis Douglas E., Chen Zhiduan*. 2012. Menispermaceae and the diversification of tropical rainforests near the Cretaceous-Paleogene boundary. New Phytologist 195: 470-478.
140. Hu Jin1, Zhang Jian1, Shan Hongyan, Chen Zhiduan*. 2012. Expression of floral MADS-box genes in Sinofranchetia chinensis (Lardizabalaceae): implications for the nature of the nectar leaves. Annals of Botany 110: 57-69.
139. Su Junxia1, Wang Wei1, Zhang Libing, Chen Zhiduan*. 2012. Phylogenetic placements of two enigmatic genera, Borthwickia and Stixis, based on molecular and pollen data and the description of a new family of Brassicales, Borthwickiaceae. Taxon 61(3): 601-611.
138. Dong Xiaoyu, Liu Zhong, Richard M. K. Sauders, Chen Zhiduan*. 2012. Floral ontogeny of Schisandra chinensis (Schisandraceae): implications for androecial evolution within Schisandra and Kadsura. Plant Systematics and Evolution 298(4): 713-722
137. Lu Limin, Wen Jun*, Chen Zhiduan*. 2012. A combined morphological and molecular phylogenetic analysis of Parthenocissus (Vitaceae) and taxonomic implications. Botanical Journal of the Linnean Society 168: 43-63.
136. Song Jingyuan1, Shi Linchun1, Li Dezhu, Song Yongzhen, Niu Yunyun, Chen Zhiduan. 2012. Luo Hongmei, Pang Xiaohui, Sun Zhiying, Liu Chang, Lü Aiping, Deng Youping, Zachary Larson-Rabin, Mike Wilkinson, Chen Shilin*. 2012. Extensive pyrosequencing reveals frequent intra-genomic variations of Internal Transcribed Spacer regions of nuclear ribosomal DNA. PloS One 7(8): e43971.
135. 陈之端*, 应俊生, 路安民. 2012. 中国西南地区与台湾种子植物间断分布现象. 植物学报 47(6): 551-570.
134. 叶建飞, 陈之端, 刘冰, 覃海宁, 杨永*. 2012. 中国西南与台湾地区维管植物的间断分布格局及形成机制. 生物多样性 20(4): 482-494.
2011 (133)
133. China Plant BOL Group, Li Dezhu*, Gao Lianming, Li Hongtao, Wang Hong, Ge Xuejun, Liu Jianquan, Chen Zhiduan, Zhou Shiliang, Chen Shilin, Yang Junbo, Fu Chengxin, Zeng Chunxia, Yan Haifei, Zhu Yingjie, Sun Yongshuai, Chen Siyun, Zhao Lei, Wang Kun, Yang Tuo, Duan Guangwen. 2011. Comparative analysis of a large dataset indicates that internal transcribed spacer (ITS) should be incorporated into the core barcode for seed plants. Proceedings of the National Academy of Sciences USA 108 (49): 19641-19646.
132. Jacques Frédéric M B1, Wang Wei1, Ortiz Rosa Del C1, Li Honglei, Zhou Zhekun, Chen Zhiduan*. 2011. Integrating fossils in a molecular-based phylogeny and testing them as calibration points for divergence time estimates in Menispermaceae. Journal of Systematics and Evolution 49: 25-49.
131. Li Dezhu*, Liu Jianquan, Chen Zhiduan, Wang Hong, Ge Xuejun, Zhou Shiliang Gao Lianming, Fu Chengxin, Chen Shilin. 2011. Plant DNA barcoding in China. Journal of Systematics and Evolution 49(3): 165-168.
130. Ren Hui1, Lu Limin1, Soejima Akiko, Luke Quentin, Zhang Dianxiang, Chen Zhiduan, Wen Jun*. 2011. Phylogenetic analysis of the grape family (Vitaceae) based on the noncoding plastid trnC-petN, trnH-psbA, and trnL-F sequences. Taxon 60(3): 629-637.
129. Sun Ge*, Dilcher David L*, Wang Hongshan, Chen Zhiduan. 2011. A eudicot from the early Cretaceous of China. Nature 471: 624-627.
128. Zhu Xinyu, Ma Hong, Chen Zhiduan*. 2011. Phylogenetics and evolution of Su(var)3-9 SET genes in land plants: rapid diversification in structure and function. BMC Evolutionary Biology 11: 637.
127. 谷婧, 彭勇, 许利嘉, 肖伟, 陈之端, 肖培根*. 2011. 苦丁茶商品的原植物调查与性状鉴别. 中药材 2: 196-199.
126. Zhen Meng, Xiaoguang Lin, Xing He, Yanping Gao, Hongmei Liu, Yong Liu, Yuanchun Zhou, Jianhui Li, Chen Zhiduan, Shouzhou Zhang, Yong Li. 2011. Construction of the Platform for Phylogenetic Analysis. Data Driven e-Science 01.
2010 (125)
125. Lin Ruozhu, Zeng Jie, Chen Zhiduan*. 2010. Organogenesis of reproductive structures in Betula alnoides (Betulaceae). International Journal of Plant Sciences 171(6): 586-594 with cover.
124. Liu Cuijing1, Zhang Jian1, Zhang Ning1, Shan Hongyan, Su Kunmei, Zhang Jisi, Meng Zheng, Kong Hongzhi*, Chen Zhiduan*. 2010. Interactions among proteins of floral MADS-box genes in basal Eudicots: Impications for evolution of the regulatory network for flower development. Molecular Biology and Evolution 27(7): 1598-1611.
123. Nie Zelong, Sun Hang, Chen Zhiduan, Meng Ying, Manchester Steven R, Wen Jun*. 2010. Molecular phylogeny and Biogeographic diversification of Parthenocissus (Vitaceae) disjunct between Asia and North America. American Journal of Botany 97: 1342-1353.
122. Qiu Yinlong*, Li Libo, Wang Bin, Xue Jiayu, Hendry Tory A., Li Ruiqi, Brown Joseph W, Liu Yang, Hudson Geordan T, Chen Zhiduan. 2010. Angiosperm phylogeny inferred from sequences of four mitochondrial genes. Journal of Systematics and Evolution 48(6): 391-425
121. Ren Baoqing, Xiang Xiaoguo, Chen Zhiduan*. 2010. Species identification of Alnus (Betulaceae) using nrDNA and cpDNA genetic markers. Molecular Ecology and Resources 10(4):594-605.
120. Wang Wei, Hu Hao, Xiang Xiaoguo, Yu Shengxiang, Chen Zhiduan*. 2010. Phylogenetic placements of Calathodes and Megaleranthis (Ranunculaceae): Evidence from molecular and morphological data. Taxon 59(6):1712-1720.
119. Wang Qinghua, Jia Yu*, Liu Yang, Zhiduan Chen. 2010. The systematic position of Meteoriella S. Okamura (Musci) based on molecular and morphological data. Taxon 59 (1): 93-100.
118. 任保青, 陈之端*. 2010. 植物DNA条形码技术 植物学报 45(1): 1-12.
117. 孟珍, 陈之端, 黎建辉, 刘红梅, 何星, 林小光, 张寿洲, 李勇, 胡良霖, 周园春. 2010. "陆地植物系统发育研究的工作平台构建," 计算机工程, vol. 36, pp. 272-275.
2009 (116)
116. Wang Wei, Lu Anming, Ren Yi, Mary E. Endress, Chen Zhiduan*. 2009. Phylogeny and classification of Ranunculales: evidence from four molecular loci and morphological data. Perspectives in Plant Ecology, Evolution and Systematics 11(2): 81-110.
115. Manchester Steven R*, Chen Zhiduan, Lu Anming, Uemura Kazuhiko. 2009. Eastern Asian endemic seed plant genera and their paleogeographic history throughout the Northern Hemisphere. Journal of Systematics and Evolution 47: 1-42.
114. Thien Leonard B*, Bernhardt Peter, Devall Margaret S, Chen Zhiduan, Luo Yibo, Fan Jianhua, Yuan Liangchen, Williams Joseph H. 2009. Pollination biology of basal angiosperms (ANITA grade). American Journal of Botany 96: 145-166.
2008 (113)
113. Yuan Liangchen, Luo Yibo, Thien LB, Fan Jianhua, Xu Huanli, Yukawa J, Chen Zhiduan*. 2008. Pollination of Kadsura longipedunculata (Schisandraceae), a monoecious basal angiosperm, by female, pollen-eating Megommata sp. (Cecidomyiidae: Diptera) in China. Biological Journal of the Linnean Society 93: 523-536.
112. Su Kunmei, Zhao Suzhen, Shan Hongyan, Kong Hongzhi, Lu Wenliang, Günter Theissen, Chen Zhiduan*, Meng Zheng*. 2008.The MIK region rather than the C-terminal domain of AP3-like class B floral homeotic proteins determines functional specificity in the development and evolution of petals. New Phytologist 178: 544-558.
111. Liu Yang, Jia Yu*, Wang Wei, Chen Zhiduan, Davis E Christine, Qiu Yinlong. 2008. Phylogenetic relationship of two endemic genera from East Asia: Trichocoleopsis and Neotrichocolea (Hepatica). Annals of the Missouri Botanical Garden 95: 463-474.
110. Zeng Jie, Li Jianhua, Chen Zhiduan*. 2008. A new species of Betula sect. Betulaster (Betulaceae) from China. Botanical Journal of the Linnean Society 156: 523-528.
109. Chen Zhiduan, Ren Hui, Wen Jun. 2008. Leeaceae and Vitaceae. In Flora of China, Wu Zhengyi, Peter Raven (eds.). Beijing: Science Press and St. Louis: Missouri Botanical Garden.
108. Hong Deyuan, Qiu Yinlong, Chen Zhiduan, Michael J Donoghue. 2008. Tracing Patterns of Evolution through the Tree of Life: Introduction. Journal of Systematics and Evolution 46(3): 237-238.
107. Qiu Yinlong, Chen Zhiduan*. 2008. Serving our science and community better. Journal of Systematics and Evolution 46(1): 1-2.
106. 王玛丽，刘红梅，陆树刚，刘占林，陈之端*. 2008. 岩蕨科、球盖蕨科的系统位置：叶绿体DNA trnL-F区序列证据. 植物研究 28(2): 175-178.
105. 洪德元, 陈之端, 仇寅龙. 2008. 历史催人奋进, 未来令人憧憬——纪念中国植物学会成立75周年. Journal of Systematics and Evolution 46(4): 439-440.
2007 (104)
104. Zhu Xinyu, Chase WC, Qiu Yinlong, Kong Hongzhi, Li Jianhua, Dilcher DL, Chen Zhiduan*. 2007. Mitochondrial matR sequences help to resolve deep phylogenetic relationships in rosids. BMC Evolutionary Biology 7: 217.
103. Wang Wei, Chen Zhiduan*. 2007. Generic level phylogeny of Thalictroideae (Ranunculaceae) — implications for the taxonomic status of Paropyrum and petal evolution. Taxon 56 (3): 811-821.
102. Wang Wei, Wang Hengchang, Chen Zhiduan*. 2007. Phylogeny and morphological evolution of tribe Menispermeae (Menispermaceae) inferred from chloroplast and nuclear sequences. Perspectives in Plant Ecology, Evolution and Systematics 8: 141-154.
101. Shan Hongyan, Zhang Ning, Liu Cuijing, Xu Guixia, Zhang Jian, Chen Zhiduan*, Kong Hongzhi*. 2007. Patterns of gene duplication and functional diversification during the evolution of the AP1/SQUA subfamily of plant MADS-box genes. Molecular Phylogenetics and Evolution 44: 26-41.
100. Liu Hongmei, Zhang Xianchun*, Wang Wei, Qiu Yinlong, Chen Zhiduan*. Molecular phylogeny of the fern family Dryopteridaceae inferred from chloroplast rbcL and atpB genes. 2007. International Journal of Plant Sciences 168(9): 1311-1323.
99. Liu Hongmei, Zhang Xianchun*, Chen Zhiduan*, Dong Shiyong, Qiu Yinlong. 2007. Polyphyly of the fern family Tectariaceae sensu Ching: Insights from cpDNA sequence data. Science in China 50(6): 789-798.
98. Liu Hongmei, Zhang Xianchun*, Chen Zhiduan, Qiu Yinlong. 2007. Inclusion of the Asiatic endemic genus Sorolepidium in Polystichum (Dryopteridaceae): evidence from the chloroplast rbcL and morphological evidence. Chinese Science Bulletin 52:631-638.
97. Yuan Liangchen, Luo Yibo*, Thien Leonard B, Fan Jianhua, Xu Huanli, Chen Zhiduan. 2007. Pollination of Schisandra henryi (Schisandraceae) by female, pollen-eating Megommata species (Cecidomyiidae, Diptera) in South-central China. Annals of Botany 99: 451-460.
96. Li Jianhua*, Shoup Suzanne, Chen Zhiduan. 2007. Phylogenetic relationships of diploid species of Betula (Betulaceae) inferred from DNA sequences of nuclear nitrate reductase. Systematic Botany 32(2): 357-365.
95. Zhang GM, Zhang XC, Chen Zhiduan, Liu HM, Yang WL. 2007. First insights in the phylogeny of Asian cheilanthoid ferns based on sequences of two chloroplast markers. Taxon 56(2): 369-378.
94. Qiu Yinlong*, Li Libo, Wang Bin, Chen Zhiduan, Knoop Volker, Groth-Malonek M, Dombrovska Olena, Lee Jungho, Kent Livija, Rest Joshua, Estabrook George F, Hendry Tory A, Taylor David W, Testa Christopher M, Ambros Mathew, Crandall-Stotler B, Duff R Joel, Stech Michael, Frey Wolfgang, Quandt Dietmar, Davis Charles C. 2007. The deepest divergences in land plants inferred from phylogenomic evidence. International Journal of Plant Sciences 168(5): 691-708.
93. Jeon, Jeong III, Chang Chinsung*, Chen Zhiduan, Park Tae-Yoon. 2007. Systematic aspects of foliar flavonoids in subsect. Carpinus (Carpinus, Betulaceae). Biochemical Systematics and Ecology 35: 606-613.
92. Wang Wei, Chen Zhiduan, Liu Yang, Li Ruiqi, Li Jianhua*. 2007. Phylogenetic and Biogeographic Diversification of Berberidaceae in the Northern Hemisphere. Systematic Botany 32 (4): 731-742.
91. Chen Zhiduan, Ren Hui, Wen Jun. 2007. Vitaceae. Pp. 173-177 in: Wu, Z.Y. & Raven, P.H. (eds.), Flora of China, vol. 12. Science Press, Beijing, and Missouri Botanical Garden, St. Louis.
2006 (90)
90. Liu Zhong, Hao Gang, Luo Yibo, Thien Leonard B, Rosso Samuel W, Lu Anming, Chen Zhiduan*. 2006. Phylogeny and androecial evolution in Schisandraceae, inferred from sequences of nuclear ribosomal DNA ITS and chloroplast DNA trnL-F regions. International Journal of Plant Sciences 167: 539-550.
89. Manchester Steven R, Chen Zhiduan, Zhou Zhequn 2006. Wood anatomy of Craigia (Malvales) from southeastern Yunnan, China. IAWA Journal 27: 129-136.
88. Qiu Yinlong, Li Libo, Wang Bin, Chen Zhiduan, Knoop Volker, Groth-Malonek M, Dombrovska O, Lee Jungho, Kent Livija, Rest Joshua, Estabrook George F, Hendry Tory A, Taylor David W, Testa Christoopher M, Ambros Mathew, Crandall-Stotler B, Duff R Joel, Stech, Michael, Frey Wichael, Quandt Dietmar, Davis Charles C. 2006. The deepest divergences in land plants inferred from phylogenomic evidence. Proceedings of the National Academy of Sciences USA 103: 15511-15516.
87. Shan Hongyan, Su Kunmei, Lu Wenliang, Kong Hongzhi, Chen Zhiduan*, Meng Zeng*. 2006. Conservation and divergence of candidate class B genes in Akebia trifoliata (Lardizabalaceae). Development Genes and Evolution 216: 785-795.
86. Wang Hengchang, Meng Aiping, Li Jianqiang, Feng Min, Chen Zhiduan*, Wang Wei. 2006. Floral organogenesis of Cocculus Orbiculatus and Stephania Dielsiana (Menispermaceae). International Journal of Plant Sciences 167: 951-960.
85. Wen Jun, Chen Zhiduan*. 2006. Cayratia lanceolata, a new nomenclatural combination in Vitaceae from China. Acta Botanica Yunnanica 28: 471-472.
84. Yuan Yaowu, Zhang Zhiyun, Chen Zhiduan, Olmstead, R.G. 2006. Tracking ancient polyploids: a retroposon insertion reveals an extinct diploid ancestor in the polyploid origin of Belladonna. Molecular Biology and Evolution 23: 2263-2267.
83. Zhu Yuping, Wen Jun, Zhang Zhiyun*, Chen Zhiduan*. 2006. Evolutionary relationships and diversification of Stachyuraceae based on sequences of four chloroplast markers and the nuclear ribosomal ITS region. Taxon 55: 931-940.
82. Zhang Daoyuan*, Zhang Yuan, Gaskin JF, Chen Zhiduan. 2006. Systematic position of Myrtama Ovcz. & Kinz. based on morphological and nrDNA ITS sequence evidence. Science in China 51: 117-123.
81. 种康, 瞿礼嘉, 杨维才, 王台, 王小菁, 袁明, 许亦农, 陈之端, 蒋高明. 2006. 2005年中国植物科学若干领域的重要研究进展. 植物学通报 3.
2005 (80)
80. Li Ruiqi, Chen Zhiduan*, Lu Anming. 2005. Organogenesis of the inflorescence and flowers in Platycarya strobilacea (Juglandaceae). International Journal of Plant Sciences 166(3) : 449-457.
79. Yang Y, Geng Baoyin, Dilcher DL*, Chen Zhiduan*, Lott T., 2005. Morphology and affinities of an early Cretaceous Ephedra from China. American Journal of Botany 92(2): 231-242
78. Li Guiseng, Meng Zheng*, Kong Hongzhi, Chen Zhiduan, Lu Anming*, 2005. Characterization of candidate class A, B and E floral homeotic genes from the perianthless basal angiosperm Chloranthus spicatus (Chloranthaceae). Development Genes and Evolution 215 (9): 437-449
77. Wang Wei, Li Ruiqi, Chen Zhiduan*. 2005. Systematic position of Asteropyrum (Ranunculaceae) inferred from chloroplast and nuclear sequences. Plant Systematics and Evolution 255: 41-54.
76. Liu Yang, Jia Yu, Wang Wei, Chen Zhiduan, Qiu Yinlong*, 2005. A taxonomic reassessment of Microdendron inferred from molecular and morphological evidence. The Bryologist 108 (4): 591-599.
75. Zhang Gangmin, Zhang Xianchun, Chen Zhiduan*. 2005. Phylogeny of cryptogrammoid ferns and related taxa based on rbcL sequences. Nordic Journal of Botany 23(4): 485-493.
74. Li Jianhua, Shoup S, Chen Zhiduan*. 2005. Phylogenetics of Betula (Betulaceae) inferred from sequences of nuclear ribosomal DNA. Rhodora 107(929), 69-86.
73. Manchester Steven R*, Chen Zhiduan, Geng Baoyin, Tao Junrong. 2005. Middle Eocene flora of Huadian, Jilin Province, northeastern China. Acta Palaeobotanica 45(1), year 2005: 3-26.
72. 种康, 杨维才, 王台, 瞿礼嘉, 蒋高明, 王小菁, 许亦农, 陈之端, 于昕. 2005. 2004年中国植物科学若干领域研究进展. 植物学通报 4.
2004 (71)
71. Chen Zhiduan, Li Jianhua, 2004. Phylogenetics and biogeography of Alnus (Betulaceae) inferred from sequences of nuclear ribosomal DNA ITS region. International Journal of Plant Sciences 165(2): 325-335.
70. Li Ruiqi, Chen Zhiduan, Lu Anming, Soltis Douglas E, Soltis Pamela S, Manos, Paul S, 2004. Phylogenetic relationships in Fagales based on DNA sequences from three genomes. International Journal of Plant Sciences 165(2): 311-324.
69. Chen Iju*, Manchester Steven R, Chen Zhiduan, 2004. Anatomically preserved seeds of Nuphar (Nymphaeaceae) from the Early Eocene of Wutu, Shandong Province, China. American Journal of Botany 91(8): 1265-1272.
68. Xiang Qiuyun, Zhang Wenheng, Ricklefs Robert E, Qian Hong, Chen Zhiduan, Wen Jun, Li Jianhua, 2004. Regional differences in rates of plant speciation and molecular evolution: A comparison between eastern Asia and eastern North America. Evolution 2175-2184.
67. 汤彦承*, 路安民, 陈之端. 2004. 生花植物概念简介及其名称的商榷. 云南植物研究 26(5): 475-481.
66. 洪亚平, 代子闻, 陈之端, 李富才. 2004. 木犀科梣属 (Fraxinus) 三心皮子房的确证及其系统学意义. 河南林业科技 1.
2003 (65)
65. Zhang Wenheng, Chen Zhiduan*, Li Jianhua, Chen Hubiao, Tang Yancheng, 2003. Phylogeny of the Dipsacales s.l. based on chloroplast trnL-F and ndhF sequences. Molecular Phylogenetics and Evolution 26:176-189.
64. Kang Yun, Zhang Mingli*, Chen Zhiduan. A preliminary phylogenetic study of the subgenus Pogonophace (Astragalus) in China based on ITS sequence data. Acta Botanica Sinica 45(2): 140-145.
63. Meng Shaowu, Andrew W. Douglas, Li Dezhu*, Chen Zhiduan, Liang Hanxing, Yang Junbo. 2003. Phylogeny of Saururaceae based on morphology and five regions from three plant genomes. Annals of the Missouri Botanical Garden 90(4):592-602.
62. Peng Yalin, Chen Zhiduan, Gong Xun, Zhong Yang, Shi Suhua*. 2003. Phylogenetic position of Dipentodon sinicus: evidence from DNA sequences of chloroplast rbcL, nuclear ribosomal 18S, and mitochondrial matR genes. Botanical Bulletin of Academia Sinica 44: 217-222.
61. Li Guisheng*, Meng Zheng,Kong Hongzhi，Chen Zhiduan，Lu Anming. 2003. ABC model and floral evolution. Chinese Science Bulletin 48(23): 2415-2421 (in Chinese); 48 (24): 2651-2657 (in English).
60. Ren Hui，Pan Kaiyu，Chen Zhiduan*，Wang Renqing, 2003. Structural characters of leaf epidermis and their systematic significance in Vitaceae. Acta Phytotaxonomica Sinica 41(6): 531-544。
59. Wang Mali, Chen Zhiduan, Zhang Xianchun, Lu Shugang, Zhao Guifang*, 2003, Phylogeny of the Athyriaceae: evidence from chloroplast trnL-F region sequences. Acta Phytotaxonomica Sinica 41(5): 416-426.
58. 吴征镒, 汤彦承, 路安民, 陈之端, 李德铢. 2003. 中国被子植物科属综论. 科学出版社, 北京. [Wu Zhengyi, Tang Yancheng, Lu Anming, Chen Zhiduan, Li Dezhu, 2003. The familiesand genera of angiosperms in China.Science Press, Beijing (pages 1400).]
57. 张原*, 陈之端. 2003. 分子进化生物学中序列分析方法的新进展. 植物学通报, 20(4): 462-468.
2002 (56)
56. Kong Hongzhi*, Chen Zhiduan, Lu Anming. 2002. Phylogeny of Chloranthus (Chloranthaceae) based on nulear ribosomal ITS and plastid trnL-F sequence data. American Journal of Botany 89: 940-946.
54. Liu Jianquan*, Chen Zhiduan, Lu Anming. 2002. Molecular evidence for the sister relationship of the eastern Asia-North American intercontinental species pair in the Podophyllum group (Berberidaceae). Botanical Bulletin of Academic Sinica 43(2): 147-154.
53. Liu Jianquan*, Gao Tiangang, Chen Zhiduan, Lu Anming. 2002. Molecular phylogeny and biogeography of the Qinghai-Tibet Plateau endemic Nannoglottis (Asteraceae). Molecular Phylogenetics and Evolution 23(3): 307-325.
52. Li Ruiqi, Chen Zhiduan*, Hong Yaping, Lu Anming. 2002. Phylogenetic relationships of the“higher” hamamelids based on chloroplast trnL-F sequences. Acta Botanica Sinica 44(12): 1462-1468.
51. Meng Shaowu, Chen Zhiduan, Li Dezhu*, Liang Hanxing. 2002. Phylogeny of Saururaceae based on mitochondrial matR gene sequence data. Journal of Plant Research 115(2): 71-76.
50. Tang Yancheng*, Lu Anming, Chen Zhiduan, Zhang Yuan, Zhang Fumin. 2002. On extant primitive angiosperms and their phytogeography. Acta Phytotaxonomica Sinica 40(3): 242-259.
49. Wu Zhengyi, Tang Yancheng, Lu Anming, Chen Zhiduan, Li Dezhu. 2002. Synopsis of a new “polyphyletic-polychronic-polytopic” system of the angiosperms. Acta Phytotaxonomica Sinica 40(4): 289-322.
48. 洪亚平, 陈之端*. 2002. 易卷曲叶表皮制片技术(NaOCl法)的改进. 植物学通报, 06期
2001 (47)
47. Chen Zhiduan, Xing Shuping, Liang Hanxing, Lu Anming, 2001. Morphogenesis of female reproductive organs of Carpinus turczaninowii and Ostryopsis davidiana (Betulaceae). Acta Botanic Sinica 43(11): 1110-1114.
46. Meng Shaowu, Chen Zhiduan, Li Dezhu, Liang Hanxing, 2001. Phylogeny of Saururaceae inferred from matR sequence data. Acta Botanica Sinica 43(6): 653-656.
45. Liu Jianquan, Chen Zhiduan, Lu Anming, 2001. A preliminary study of the phylogeny of the Swertiinae based on ITS data (Gentianaceae). Israel Journal of Plant Sciences 49(4): 302-308.
44. Liu Jianquan*, Chen Zhiduan, Liao Zhixin, Lu Anming, 2001. A comparison of ITS sequences of Tibetan medicine”Zang YIN Chen”-Swertia mussotti and its adulterant species. Acta Pharmaceutica Sinica 36(1): 67-70.
43. 陈之端, 路安民 1995. 桦木科植物的系统发育和演化. 中国科学院院刊 16(3): 188-191.
42. 洪亚平, 陈之端*, 路安民. 2001. 根据ITS序列证据重建防己科蝙蝠葛族的系统发育. 植物分类学报 39(2): 97-104.
41. 洪亚平, 潘开玉, 陈之端*, 路安民. 2001. 防己科植物的叶表皮特征及其系统学意义. 植物学报 43(6): 615-623.
40. 孔昭宸, 陈之端, 陈灵芝. 2001. 生物多样性起源和变化. 在陈灵芝, 马克平 (主编) 生物多样性科学: 原理与实践. 上海: 上海科学技术出版社, 66-92.
39. 刘建全*, 陈之端, 路安民. 2001. 藏药雪莲原植物水母雪莲及其混淆种类的ITS序列比较和分子鉴定. 中草药, 05期
38. 张文蘅, 陈之端, 陈虎彪, 汤彦承. 2001. 从叶绿体DNA trnL-F序列论双参属的归属问题. 植物分类学报, 39(04): 337-344.
37. 陈之端*. 2001. 分类学中的新生长点——植物分子系统学. 植物杂志, 05期.
2000之前 (36)
36. Liu Jianquan, Chen Zhiduan, Lu Anming. 2000. The Phylogentic relationships of an endemic genus Sinadoxa in Qinghai Xizang Plateau: evidence from ITS sequences analysis. Acta Botanica Sinica 42(6): 656-658
35. Kong Hongzhi, Chen Zhiduan. 2000. Phylogeny in Chloranthus Swartz. (Chloranthaceae) inferred from sequence analysis of nrDNA ITS region. Acta Botanica Sinica 43(7):762-764
34. Qiu Yinlong, Lee Jungho, Bernasconi-Quadroni F, Soltis Douglas E, Soltis Pamela S, Zanis Michael, Zimmer Elizabeth A, Chen Zhiduan, Savolainen Vincent, Chase Mark W. 2000. Phylogeny of basal angiosperms: analysis of five genes from three genomes. International Journal of Plant Sciences 161 (6 Suppl.): S3-S27.
33. Song Baohua, Chen Zhiduan, Wang Xiaoquan, Li Fazeng. 2000. Sequence analysis of the ITS region in Amaranthus. Acta Botanica Sinica 42(11): 1184-1189
32. Liu Zhong, Wang Xiaoquan, Chen Zhiduan, Lin Qi, Lu Anming. 2000. Phylogeny of Schisandraceae inferred from sequence analysis of nrDNA ITS region. Acta Botanica Sinica 42(7):758-761
31. 张道远, 陈之端, 孙海英, 尹林克, 潘伯荣2000. 用核糖体DNA的ITS序列探讨中国柽柳科植物系统分类中的几个问题. 西北植物学报, 03期
30. Chen Zhiduan, Manchester Steven R, Sun Haiying, 1999. Phylogeny and evolution of the Betulaceae as inferred from DNA sequences, morphology, and paleobotany. American Journal of Botany 86(8): 1168-1181.
29. Feng Yuxing, Chen Zhiduan, Wang Xiaoquan, Pan Kaiyu, Hong Deyuan. 1999. A taxonomical Revision of the Loropetalum-Tetrathyrium complex and its systematic position in Hamamelidoideae inferred from ITS sequences. Taxon 48:689-700.
28. Lu Anming, Zhang Zhiyun, Chen Zhiduan, Pan Kaiyu. 1999. Embryology and adaptive ecology in the genus Przewalskia. In Solanaceae IV. (M.Nee, et al. eds). 71-80. The Royal Botanic Gardens, Kew.
27. Qiu Yinlong, Lee Jungho, Bernasconi-Quadron F, Soltis Douglas E, Soltis Pamela S, Zanis Michael, Zimmer Elizabeth A, Chen Zhiduan, Savolainen Vincent, Chase Mark W, 1999. The earliest angiosperms: evidence from mitochodrial, plastid and nuclear genomes. Nature 402: 404-407.
26. Hu Yufan, Chen Zhiduan, Chen CJ, Geng Baoyin. 1999. Discoveries of some fossils of cycad reproductive organs from China and their significance to the origin of cycads. Chen CJ (ed.) Biology and Conservation of Cycads. Beijing: International Academic Publishers.
25. Hilton, J, Wang, SJ, Chen Zhiduan, Tian, BL. 1999. Endemic fossil seed plants from China and a reassessment of coniferophyte phylogeny. Progress in Natural Science 9(10): 767-774.
24. 汤彦承, 路安民, 陈之端. 1999. 一个被子植物“目”的新分类系统简介. 植物分类学报, 06期
23. 陈之端. 1999. 桦木科植物的起源和散布. 在路安民 (主编). 种子植物科属地理. 科学出版社, 北京. 236-258.
22. Chen Zhiduan, Wang Xiaoquan, Sun Haiying, Han Ying, Lu Anming. 1998. The systematic position of the Rhoipteleaceae: evidence from nuleotide sequences of rbcL gene. Acta Phytotaxonomica Sinica 36(1): 1-7.
21. Manchester Steven R, Chen Zhiduan. 1998. A new genus of Coryloideae (Betulaceae) from the Paleocene of North America. International Journal of Plant Sciences 159(3): 522-532.
20. 吴征镒, 汤彦承, 路安民, 陈之端. 1998. 试论木兰植物门的一级分类——一个被子植物八纲系统的新方案. 植物分类学报, 05期.
19. 邢树平, 陈之端, 路安民. 1998. Ostrya virginiana(Betulaceae)的胚珠和胚囊发育及其系统学意义植物分类学报, 05期.
18. 孙坤, 陈家宽, 陈之端.1998. 被子植物系统学中花发育研究的进展及对今后研究的思考. 植物分类学报, 06期
17. 洪亚平, 钟扬, 陈之端. 1998. 交互分类信息系统和电子植物志的设计与实现──Ⅱ.分类排列和"系统学处理"软件系统. 武汉植物学研究, 04期.
16. 陈之端, 冯旻编译. 路安民, 葛颂, 汪小全, 孔宏智校. 1998. 植物系统学进展. 科学出版社, 北京.
15. Chen Zhiduan, Lu Anming. 1997. Origin and early evolution of angiosperms: retrospect and prospects. Acta Phytotaxonomica Sinica 35(4): 375-384.
14. Tang Yancheng, Lu Anming, Chen Zhiduan. 1997. The living fossil plants-rescue, conservation and studies in urgent demand. Chinese Biodiversity 5(4): 307-308.
13. Manchester Steven R, Chen Zhiduan. 1996. Palaeocarpinus sp. nov. (Betulaceae) form the Paleocene of Wyoming, U.S.A. International Journal of Plant Sciences 157(5): 644-655.
12. Liang Hanxing, Pan Kaiyu, Chen Zhiduan. 1996. Floral organogenesis in Saururus chinensis (Saururaceae). Acta Phytotaxonomica Sinica 34(6): 565-568.
11. Chen Zhiduan, Zhang Zhiyun, Lu Anming. 1995. Solanaceae and Cucurbitaceae, in Wang Wentsai (ed.). Vascular Plants of Wulingshan Mountains. 413-416, 449-452, Beijing: Science Press.
10. 陈之端, 路安民*. 1995. 桦木科植物的起源和早期分化. 中国科学院研究生院学报 12 (2): 199-204.
9. 路安民、陈之端. 1994. 被子植物系统学的原理和方法. 在: 陈家宽, 杨继, 主编 植物进化生物学. 武汉: 武汉大学出版社. pp. 280-308.
8. Chen Zhiduan, 1994. Phylogeny and phytogeography of the Betulaceae(I). Acta Phytotaxonomica Sinica 32(1): 1-32. [陈之端 1994. 桦木科植物的系统发育和地理分布. 植物分类学报 32(1), 1-31.]
7. Chen Zhiduan. 1994. Phylogeny and phytogeography of the Betulaceae(II). Acta Phytotaxonomica Sinica 32(2): 101-153. [陈之端 1994. 桦木科植物的系统发育和地理分布(续). 植物分类学报 32(2), 101-153.]
6. Zhang Zhiyun, Chen Zhiduan. 1994. Embryology of the genus Carpinus L. and its systematic significance. Cathaya 5: 59-68.
5. Chen Zhiduan. 1991. Pollen morphology of the Betulaceae. Acta Phytotaxonomica Sinica 29(6): 494-503.
4. Chen Zhiduan, Zhang Zhiyun. 1991. A study on foliar epidermis in the Betulaceae. Acta Phytotaxonomica Sinica 29(2): 156-163.
3. Chen Zhiduan, Lu Anming, Pan Kaiyu. 1991. The embryology of the genus Ostryopsis (Betulaceae). Cathaya 2: 53-62.
2. Chen Zhiduan, Luo Yibo. 1990. An investigation on forest vegetation in Tiane County of Guangxi. Plants 17(2): 18-19. (cover photo).
1. 徐孝庆, 陈之端. 1987. 毛白杨人工林生物量的初步研究. 南京林业大学学报 1: 130-136.
书评与科普文章等：
陈之端. 2013. 人类离不开植物. 科学世界 12期，卷首语.
陈之端，路安民. 2012. 植物系统学（原著第二版：Plant Systematics by Michael G. Simpson）导读. 北京：科学出版社.
陈之端，孙苗. 2012. 植物系统学（原著第二版：Plant Systematics by Michael G. Simpson）前言. 北京：科学出版社.
位于北京西部香山脚下的中国科学院植物研究所是我国系统与进化生物学领域的第一个国家重点实验室
