Phylogenomic conflict analyses of the plastid and mitochondrial genomes via deep genome skimming highlight their independent evolutionary histories: A case study in the cinquefoil genus Potentilla

2023-10-17

  作  者:Xue TT, Janssens SB*, Liu BB*, Yu SX*

  影响因子:4.1

  刊物名称:Molecular Phylogenetics and Evolution

  出版年份:2023

  卷:190 期: 页码:107956

  论文摘要:

  Phylogenomic conflicts are widespread among genomic data, with most previous studies primarily focusing on nuclear datasets instead of organellar genomes. In this study, we investigate phylogenetic conflict analyses within and between plastid and mitochondrial genomes using?Potentilla?as a case study. We generated three plastid datasets (coding, noncoding, and all-region) and one mitochondrial dataset (coding regions) to infer phylogenies based on concatenated and multispecies coalescent (MSC) methods. Conflict analyses were then performed using PhyParts and Quartet Sampling (QS). Both plastid and mitochondrial genomes divided the?Potentilla?into eight highly supported clades, two of which were newly identified in this study. While most organellar loci were uninformative for the majority of nodes (bootstrap value?

  全文链接:https://www.sciencedirect.com/science/article/pii/S1055790323002567?via%3Dihub


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